Detail information of GWHGAAEX001243/evm.TU.scaffold_108.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|386713658|ref|YP_006179981.1| | 9.00E-26 | M10 family peptidase [Halobacillus halophilus DSM 2266] |
| KOG | KOG1565 | 2.00E-80 | Gelatinase A and related matrix metalloproteases |
| nr | gi|449524374|ref|XP_004169198.1| | 2.12E-87 | PREDICTED: metalloendoproteinase 1-like, partial [Cucumis sativus] |
| Swissprot | tr|P29136|MEP1_SOYBN | 1.00E-47 | Metalloendoproteinase 1 (Precursor) |
| trEMBL | tr|A0A068UNE8|A0A068UNE8_COFCA | 1.00E-87 | Coffea canephora |
| TAIR | AT2G45040 | 2.00E-80 | Matrixin family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000117 | 415031 | 415771 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001243
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00413.23 | Peptidase_M10 | 48 | 208 | 3.20E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004222 | Molecular Function | metalloendopeptidase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0008237 | Molecular Function | metallopeptidase activity |
| GO:0031012 | Cellular Component | extracellular matrix |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.960 |
| SRR2545915 | Juvenile tuber | 10.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.960 |
| SRR5643514 | five period of Gastrodia elata | 9.040 | |
| SRR5643515 | five period of Gastrodia elata | 13.830 | |
| SRR5643524 | five period of Gastrodia elata | 7.320 | |
| SRR5643525 | five period of Gastrodia elata | 24.610 | |
| SRR5643528 | five period of Gastrodia elata | 26.280 | |
| SRR5643658 | five period of Gastrodia elata | 10.220 | |
| SRR5643659 | five period of Gastrodia elata | 2.740 | |
| SRR5643660 | five period of Gastrodia elata | 6.250 | |
| SRR5643661 | five period of Gastrodia elata | 2.560 | |
| SRR5643662 | five period of Gastrodia elata | 1.940 | |
| SRR5643663 | five period of Gastrodia elata | 0.180 | |
| SRR5643664 | five period of Gastrodia elata | 1.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 40.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.350 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.66 |
| Juven | Juvenile tuber | 1.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 253.17 | |
| Mother_Juven | Mother tuber of Juvenile | 145.23 |