Detail information of GWHGAAEX001245/evm.TU.scaffold_108.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG29810Protein involved in autophagocytosis during starvation
nrgi|743778361|ref|XP_010919639.1|0PREDICTED: autophagy-related protein 3 isoform X1 [Elaeis guineensis]
Swissprottr|Q0WWQ1|ATG3_ARATH0Autophagy-related protein 3
trEMBLtr|V4KKP4|V4KKP4_EUTSA0Autophagy-related protein 3 {ECO:0000256|RuleBase:RU004405}
TAIRAT5G615000autophagy 3 (APG3)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000117434478443827-
Transcript Sequence

Network for GWHGAAEX001245

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03986.12Autophagy_N71384.10E-39
PF03987.14Autophagy_act_C2002608.80E-19
PF10381.8Autophagy_C2813058.70E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08343ATG3 Autophagy - animal map04140
Autophagy - yeastmap04138
Autophagy - othermap04136

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.340
SRR2545915Juvenile tuber19.420
SRP108465SRR5643513five period of Gastrodia elata18.510
SRR5643514five period of Gastrodia elata26.520
SRR5643515five period of Gastrodia elata21.390
SRR5643524five period of Gastrodia elata27.420
SRR5643525five period of Gastrodia elata24.360
SRR5643528five period of Gastrodia elata28.040
SRR5643658five period of Gastrodia elata29.020
SRR5643659five period of Gastrodia elata15.240
SRR5643660five period of Gastrodia elata16.310
SRR5643661five period of Gastrodia elata13.240
SRR5643662five period of Gastrodia elata13.160
SRR5643663five period of Gastrodia elata10.360
SRR5643664five period of Gastrodia elata11.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.730
SRR6049655Rhizomagastrodiae_C368-T10_good_112.680
SRR6049656Rhizomagastrodiae_C368-T07_good_117.010
SRR6049657Rhizomagastrodiae_C368-T07_good_119.050
SRR6049658Rhizomagastrodiae_C368-T04_good_120.550
SRR6049659Rhizomagastrodiae_C368-T04_good_120.660
SRR6049660Rhizomagastrodiae_C368-T01_good_120.940
SRR6049661Rhizomagastrodiae_C368-T04_good_119.350
SRR6049662Rhizomagastrodiae_C368-T01_good_120.400
SRR6049663Rhizomagastrodiae_C368-T01_good_118.960
SRR6049664Rhizomagastrodiae_C368-T10_good_126.970
SRR6049665Rhizomagastrodiae_C368-T10_good_126.970
SRP279888GastroGastrodia elata tuber 26.19
JuvenJuvenile tuber28.03
Mother_GastroMother tuber of Gastrodia elata 44.55
Mother_JuvenMother tuber of Juvenile 31.13