Detail information of GWHGAAEX001246/evm.TU.scaffold_108.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG47623.00E-77DNA replication factor
nrgi|672108875|ref|XP_008787296.1|3.00E-165PREDICTED: CDT1-like protein a, chloroplastic [Phoenix dactylifera]
Swissprottr|Q9SJW9|CDT1A_ARATH9.00E-78CDT1-like protein a, chloroplastic (Precursor)
trEMBLtr|M0RGN4|M0RGN4_MUSAM8.00E-138Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P09080_001}
TAIRAT2G312703.00E-77homolog of yeast CDT1 A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000117529205532383+
Transcript Sequence

Network for GWHGAAEX001246

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08839.10CDT11022212.30E-15
PF16679.4CDT1_C4445361.50E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.220
SRR2545915Juvenile tuber0.200
SRP108465SRR5643513five period of Gastrodia elata2.080
SRR5643514five period of Gastrodia elata1.300
SRR5643515five period of Gastrodia elata0.930
SRR5643524five period of Gastrodia elata1.260
SRR5643525five period of Gastrodia elata0.140
SRR5643528five period of Gastrodia elata0.110
SRR5643658five period of Gastrodia elata0.450
SRR5643659five period of Gastrodia elata1.610
SRR5643660five period of Gastrodia elata1.190
SRR5643661five period of Gastrodia elata0.770
SRR5643662five period of Gastrodia elata0.230
SRR5643663five period of Gastrodia elata1.160
SRR5643664five period of Gastrodia elata0.150
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.900
SRR6049655Rhizomagastrodiae_C368-T10_good_14.710
SRR6049656Rhizomagastrodiae_C368-T07_good_14.080
SRR6049657Rhizomagastrodiae_C368-T07_good_12.140
SRR6049658Rhizomagastrodiae_C368-T04_good_11.630
SRR6049659Rhizomagastrodiae_C368-T04_good_11.090
SRR6049660Rhizomagastrodiae_C368-T01_good_12.030
SRR6049661Rhizomagastrodiae_C368-T04_good_13.490
SRR6049662Rhizomagastrodiae_C368-T01_good_14.760
SRR6049663Rhizomagastrodiae_C368-T01_good_12.940
SRR6049664Rhizomagastrodiae_C368-T10_good_15.400
SRR6049665Rhizomagastrodiae_C368-T10_good_15.400
SRP279888GastroGastrodia elata tuber 0.37
JuvenJuvenile tuber0.23
Mother_GastroMother tuber of Gastrodia elata 0.03
Mother_JuvenMother tuber of Juvenile 0.03