Detail information of GWHGAAEX001247/evm.TU.scaffold_108.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|17230958|ref|NP_487506.1| | 1.00E-36 | hypothetical protein alr3466 [Nostoc sp. PCC 7120] |
| KOG | KOG0292 | 0 | Vesicle coat complex COPI, alpha subunit |
| nr | gi|743778306|ref|XP_010919610.1| | 0 | PREDICTED: coatomer subunit alpha-1 [Elaeis guineensis] |
| Swissprot | tr|Q0J3D9|COPA3_ORYSJ | 0 | Coatomer subunit alpha-3 |
| trEMBL | tr|B9RHB0|B9RHB0_RICCO | 0 | Coatomer subunit alpha {ECO:0000256|PIRNR:PIRNR003354} |
| TAIR | AT1G62020 | 0 | Coatomer, alpha subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000117 | 535395 | 550562 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001247
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 45 | 79 | 6.10E-05 |
| PF00400.31 | WD40 | 84 | 121 | 7.50E-08 |
| PF00400.31 | WD40 | 126 | 163 | 1.30E-07 |
| PF00400.31 | WD40 | 199 | 231 | 0.0075 |
| PF00400.31 | WD40 | 241 | 276 | 1.70E-05 |
| PF04053.13 | Coatomer_WDAD | 343 | 768 | 1.20E-133 |
| PF06957.10 | COPI_C | 815 | 1216 | 3.40E-157 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005198 | Molecular Function | structural molecule activity |
| GO:0030126 | Cellular Component | COPI vesicle coat |
| GO:0030117 | Cellular Component | membrane coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 55.640 |
| SRR2545915 | Juvenile tuber | 61.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 48.070 |
| SRR5643514 | five period of Gastrodia elata | 44.200 | |
| SRR5643515 | five period of Gastrodia elata | 47.530 | |
| SRR5643524 | five period of Gastrodia elata | 44.740 | |
| SRR5643525 | five period of Gastrodia elata | 40.240 | |
| SRR5643528 | five period of Gastrodia elata | 47.230 | |
| SRR5643658 | five period of Gastrodia elata | 46.350 | |
| SRR5643659 | five period of Gastrodia elata | 55.900 | |
| SRR5643660 | five period of Gastrodia elata | 54.580 | |
| SRR5643661 | five period of Gastrodia elata | 48.990 | |
| SRR5643662 | five period of Gastrodia elata | 50.200 | |
| SRR5643663 | five period of Gastrodia elata | 50.420 | |
| SRR5643664 | five period of Gastrodia elata | 47.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 44.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 46.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 44.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 54.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 49.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 46.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 46.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.77 |
| Juven | Juvenile tuber | 57.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 38.63 | |
| Mother_Juven | Mother tuber of Juvenile | 52.35 |