Detail information of GWHGAAEX001252/evm.TU.scaffold_108.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428780468|ref|YP_007172254.1|1.00E-39lignostilbene-alpha,beta-dioxygenase-like protein [Dactylococcopsis salina PCC 8305]
KOGKOG12850Beta, beta-carotene 15,15'-dioxygenase and related enzymes
nrgi|672144503|ref|XP_008796153.1|0PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Phoenix dactylifera]
Swissprottr|Q7XU29|CCD7_ORYSJ0Carotenoid cleavage dioxygenase 7, chloroplastic (Precursor)
trEMBLtr|M0RU30|M0RU30_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P21000_001}
TAIRAT2G449900carotenoid cleavage dioxygenase 7

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000117639235642399-
Transcript Sequence

Network for GWHGAAEX001252

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03055.14RPE65716049.80E-79
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17912CCD7 Biosynthesis of secondary metabolites map01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0016702Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.950
SRR2545915Juvenile tuber0.040
SRP108465SRR5643513five period of Gastrodia elata1.730
SRR5643514five period of Gastrodia elata0.870
SRR5643515five period of Gastrodia elata0.490
SRR5643524five period of Gastrodia elata1.030
SRR5643525five period of Gastrodia elata1.690
SRR5643528five period of Gastrodia elata1.290
SRR5643658five period of Gastrodia elata0.770
SRR5643659five period of Gastrodia elata0.180
SRR5643660five period of Gastrodia elata0.370
SRR5643661five period of Gastrodia elata0.310
SRR5643662five period of Gastrodia elata0.500
SRR5643663five period of Gastrodia elata0.130
SRR5643664five period of Gastrodia elata0.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.100
SRR6049655Rhizomagastrodiae_C368-T10_good_110.220
SRR6049656Rhizomagastrodiae_C368-T07_good_16.330
SRR6049657Rhizomagastrodiae_C368-T07_good_16.900
SRR6049658Rhizomagastrodiae_C368-T04_good_13.150
SRR6049659Rhizomagastrodiae_C368-T04_good_11.470
SRR6049660Rhizomagastrodiae_C368-T01_good_15.340
SRR6049661Rhizomagastrodiae_C368-T04_good_111.110
SRR6049662Rhizomagastrodiae_C368-T01_good_14.170
SRR6049663Rhizomagastrodiae_C368-T01_good_11.180
SRR6049664Rhizomagastrodiae_C368-T10_good_12.150
SRR6049665Rhizomagastrodiae_C368-T10_good_12.150
SRP279888GastroGastrodia elata tuber 0.57
JuvenJuvenile tuber17.95
Mother_GastroMother tuber of Gastrodia elata 0.41
Mother_JuvenMother tuber of Juvenile 2.96