Detail information of GWHGAAEX001253/evm.TU.scaffold_108.26


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|158336240|ref|YP_001517414.1|9.00E-41hypothetical protein AM1_3102 [Acaryochloris marina MBIC11017]
KOGKOG12850Beta, beta-carotene 15,15'-dioxygenase and related enzymes
nrgi|672144503|ref|XP_008796153.1|0PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Phoenix dactylifera]
Swissprottr|Q7XU29|CCD7_ORYSJ0Carotenoid cleavage dioxygenase 7, chloroplastic (Precursor)
trEMBLtr|M0RU30|M0RU30_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P21000_001}
TAIRAT2G449900carotenoid cleavage dioxygenase 7

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000117648224653039+
Transcript Sequence

Network for GWHGAAEX001253

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03055.14RPE65505802.40E-76
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17912CCD7 Biosynthesis of secondary metabolites map01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0016702Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.070
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata1.230
SRR5643514five period of Gastrodia elata5.540
SRR5643515five period of Gastrodia elata2.190
SRR5643524five period of Gastrodia elata2.910
SRR5643525five period of Gastrodia elata14.720
SRR5643528five period of Gastrodia elata5.830
SRR5643658five period of Gastrodia elata2.630
SRR5643659five period of Gastrodia elata0.890
SRR5643660five period of Gastrodia elata0.810
SRR5643661five period of Gastrodia elata0.450
SRR5643662five period of Gastrodia elata0.690
SRR5643663five period of Gastrodia elata0.500
SRR5643664five period of Gastrodia elata0.610
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.450
SRR6049655Rhizomagastrodiae_C368-T10_good_11.200
SRR6049656Rhizomagastrodiae_C368-T07_good_10.320
SRR6049657Rhizomagastrodiae_C368-T07_good_10.400
SRR6049658Rhizomagastrodiae_C368-T04_good_10.170
SRR6049659Rhizomagastrodiae_C368-T04_good_10.100
SRR6049660Rhizomagastrodiae_C368-T01_good_10.810
SRR6049661Rhizomagastrodiae_C368-T04_good_10.190
SRR6049662Rhizomagastrodiae_C368-T01_good_11.140
SRR6049663Rhizomagastrodiae_C368-T01_good_11.030
SRR6049664Rhizomagastrodiae_C368-T10_good_11.280
SRR6049665Rhizomagastrodiae_C368-T10_good_11.280
SRP279888GastroGastrodia elata tuber 1.46
JuvenJuvenile tuber3.75
Mother_GastroMother tuber of Gastrodia elata 1.03
Mother_JuvenMother tuber of Juvenile 0.50