Gene detail

Detail information of GWHGAAEX001256/evm.TU.scaffold_108.29

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2604	Subunit of cis-Golgi transport vesicle tethering complex - Sec34p
nr	gi\|743848340\|ref\|XP_010939335.1\|	PREDICTED: conserved oligomeric Golgi complex subunit 3 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0T0M9\|M0T0M9_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P22040_001}
TAIR	AT1G73430	sec34-like family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	803481	905489	+

Transcript Sequence
>GWHTAAEX001256 AGCCACCAAAGTCGGTTTTTTTCCCAAAGAAAGAACTCTGCAATCTCTCCAGCGCCATCTCTTCCTCTCTTCGTCCACTTTCTTTTTTCCAATTATAAATCGCTAAATCCTACAGAACTGGCATTTAAGAAATTTGCGCGATTTAACCTTTTTTCTTCACGTTGCTAGAGCAATTCCTGCGTAATCCTGGAACAGGCCCTTAATGGCTTCAGCTCCGCCTCCAGGATCTGGAGCCGTCTTGCGAGGCTACAGCTTAGCCAGCAATTGGGAACAGAACGCCCCTTTGACTGATGAGCAGACGGCTGCGATAACATCTTTGTCCCATGCTGTTGCTGAGCGTCCCTTCCCTCCTTATTTGACTGAAGATCAAAACTCGCGGAAAGAAGGAAGTGTAGTGATTTCATTAAATGATGCTGTGGAAGAAGCTTGCATCAATGTGGTTTTGGTCAATACTCATCAGTTTTACAAGTGGTTCGCTGATTTGGAGTTCGCTATGAAGTCAGAAACAGAGGAGAAGTATTGCCTCTACGTGAATACATTGGTGGAACATATTCAAATATGTGATGGAATACTCAAACAGGTTGATGATACCCTTAATTTATTTAATGAACTACAAAGGCTTCAACAATCTGTTGCTACAAAGACAAAAATGTTGCATGATGCATGTGATCGGTTGCTTCTAGAAAAGCAACGCTTGATAGATTTTTCCGAAGCTATTCGAAGTAAGCTGAACTATTTTAATGAATTGGAGAATATTTCTTCTAGTTTCTATTCCCAAAACATGAGTATTGGGAATGAACAATTTCTCCTTTTGCTGAAGAGGCTTGATGACTGCATCTCGTATGTTGAAAGCAATCATCAATATGCAGAATCGGGGGTGTACTTAGTGAAGTTTAGACAGCTTCAGTCTCGCGCTTTAGGCATGATACGATCTCATGTGCTTTCAGTTCTCAAAACTGCAGCTTCCCAGATTCAGGCTGCTATCCGGGGAAGTGGTTCAAAGAAAGCTTTGGCAGCAGGGGTTGAAGAATCTGTTATTTATGTACGTTTTAAAGCAGCAGCTAGCGAGCTCAAACCTCTTTTTGAGGAAATTGAAAGCAGGTATTCAAGGAAAGAATATACTCTGATTTTAATTGAATGCCACAGAATCTATTGTGAGCAGAGATTATCCTTAGTAAAAAGTATAGTGCAACAGAGGATATCGGAATTTGCTAAGGAGGAGGCTTTATCTTCGTTGACTAGATCTGGATGTGCGTATTTAATGCAGGTTTTCCGGTTGGAACATCAACTGTTTGACCATTTCTTTCCGTCATCTTCAACAGATGCCTCTAATATGGCTCCATTATTAGATCAGCTATGTGCATATTTATATGATACTCTGCGGCCTAAAGTGATATATCAAGCAAATCTTGATTCTCTGTGTGAACTTGTCGACATCCTAAAATTTGAAGTGTTAGGGGGTCAGCTTAATAGATGCGGTGAATCACTTGCAGGACTACGCCCTACCTTGCAAAGAATACTAGCAGATGTTAATGAAAGGTTGATATTTTGTGCAAGAAAACATATTCGTGATGAGATTGCCAATTATCGTCCTTCGGATGAAGATCTTGATTACCCTGCAAGGTTGAAGCATTATGCTGAGAAAGCAACAGAAATCACTAATGATGACAGCTCGAACATTTGTAGAACTTGGTACCCACCATTGGAGAAAACATTGTCATGCTTATCAAAATTGTATCATTGCCTAGAGCCTATTGTTTTTACTGGTTTAGCTCAGGAAGCACTAGAATTTTGTTCCATATCCTTACACAATGGCAGCAAAGTCATAACAAAAAAGGCTTCTCCAATAGATGGGCAGCTTTTTCTTATCAAACATCTCCTTATTTTAAGGGAACAGATTGCTCCTTTTGATATTGAGCTTTCTGTTGCACACAAGGAGTTGGATTTCACTCATTTGCTGGAACATTTACGCAGGATTCTAAGAGGTCAGGCTTCTCTGTTTGACTTGTCAAAATCAACTTCGTTTTCTATGACATTAACTCCTCAGATTCTTGAAAGCCAGATAGATGCCAAGAAGGAGTTAGATAAAAATCTCAAAACTACATGTGAGGATTTCATAATGTCTATCACGAAGCTGATTGTTGACCCCATGCTTTCATTTGTTACAAAGGTGTCAGCTGTGAAAGCTGTACTATCATCTTCTTCAGGTTCTCAGGAAAACAAGAAATTGGATTCTGTTTTGGCAAAACCGCTGCACTCTCACGCATTTGCTACTCCAGAGAGGATTATTGAGCTTACCCAAAAGGTTAGTGACAATCTTCAGCAAGAATTACCCATAGTTGTGGCAAAAATGAACCTCTACCTGCTCAATCCTTCAACTCGTATGATTTTATTTAAACCAATCAAGACAAATATTGTGGAAGCGCATGTTCAATTACAGTTACTGCTCAGTTCCGAATACTCACAGGAAGAAATGCAGAGTTTTGGTCTCACTTCTGTCCAGCAACTTCAATCTCAAATGGACAACCTTGTTTGATTGATTGATGCGATGAGAGATAGTGCACGTGGCTGTTGAACCTAGCCAGGTGTTGTTTGCCTTTGATGATCTTAAGCTGGCGACCATTGTTGATCTGCTATTGACCTGACTGAGCTGCTGTTTCAGGGCCTAAATATGATTTCAAAGAAGATTCTGAAGGTTGTGCTTCAACGAGCTGGACTATTTTATTGATGTCTGGTTTGTGCGCATTTGAATTGTGTGTAGTATATTGTTGTTGCATACATCTCAAATTAAAAATTCATTTGATTTCATATGTACTCATTTGAAACTTAAAGTTCATTAATTTAATATAATTATGTGTTCTCTTTC

Network for GWHGAAEX001256

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04136.14	Sec34	109	256	5.90E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport
GO:0005801	Cellular Component	cis-Golgi network
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.080
SRP064423	SRR2545915	Juvenile tuber	21.980
SRP108465	SRR5643513	five period of Gastrodia elata	18.010
	SRR5643514	five period of Gastrodia elata	18.850
	SRR5643515	five period of Gastrodia elata	21.270
	SRR5643524	five period of Gastrodia elata	20.870
	SRR5643525	five period of Gastrodia elata	18.750
	SRR5643528	five period of Gastrodia elata	17.350
	SRR5643658	five period of Gastrodia elata	18.000
	SRR5643659	five period of Gastrodia elata	14.480
	SRR5643660	five period of Gastrodia elata	15.140
	SRR5643661	five period of Gastrodia elata	14.700
	SRR5643662	five period of Gastrodia elata	13.230
	SRR5643663	five period of Gastrodia elata	14.560
	SRR5643664	five period of Gastrodia elata	12.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.150
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.620
SRP279888	Gastro	Gastrodia elata tuber	16.65
	Juven	Juvenile tuber	18.74
	Mother_Gastro	Mother tuber of Gastrodia elata	22.89
	Mother_Juven	Mother tuber of Juvenile	20.88