Detail information of GWHGAAEX001260/evm.TU.scaffold_108.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695027132|ref|XP_009400894.1| | 7.81E-57 | PREDICTED: ethylene-responsive transcription factor ERF039-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8LBQ7|ERF34_ARATH | 4.00E-48 | Ethylene-responsive transcription factor ERF034 |
| trEMBL | tr|D8VD29|D8VD29_ACTDE | 8.00E-51 | Ethylene response factor 2 {ECO:0000313|EMBL:ADJ67431.1} |
| TAIR | AT2G44940 | 1.00E-47 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000117 | 969298 | 970726 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001260
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 107 | 155 | 5.90E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.510 |
| SRR2545915 | Juvenile tuber | 0.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.320 |
| SRR5643514 | five period of Gastrodia elata | 2.430 | |
| SRR5643515 | five period of Gastrodia elata | 1.680 | |
| SRR5643524 | five period of Gastrodia elata | 1.300 | |
| SRR5643525 | five period of Gastrodia elata | 2.250 | |
| SRR5643528 | five period of Gastrodia elata | 2.690 | |
| SRR5643658 | five period of Gastrodia elata | 0.750 | |
| SRR5643659 | five period of Gastrodia elata | 2.280 | |
| SRR5643660 | five period of Gastrodia elata | 2.380 | |
| SRR5643661 | five period of Gastrodia elata | 2.420 | |
| SRR5643662 | five period of Gastrodia elata | 2.940 | |
| SRR5643663 | five period of Gastrodia elata | 2.410 | |
| SRR5643664 | five period of Gastrodia elata | 2.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.63 |
| Juven | Juvenile tuber | 1.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.11 | |
| Mother_Juven | Mother tuber of Juvenile | 0.35 |