Detail information of GWHGAAEX001272/evm.TU.scaffold_108.46


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530779864|ref|YP_008431664.1|2.00E-25hypothetical protein N186_01315 [Thermofilum sp. 1910b]
KOGKOG00984.00E-142GTPase Rab2, small G protein superfamily
nrgi|643717589|gb|KDP29032.1|2.07E-142hypothetical protein JCGZ_16421 [Jatropha curcas]
Swissprottr|P92963|RAB1C_ARATH1.00E-142Ras-related protein RABB1c
trEMBLtr|A0A067JYR2|A0A067JYR2_JATCU8.00E-143Uncharacterized protein {ECO:0000313|EMBL:KDP29032.1}
TAIRAT4G171704.00E-142RAB GTPase homolog B1C

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011714512271482374+
Transcript Sequence

Network for GWHGAAEX001272

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras81677.50E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07877RAB2A AMPK signaling pathway map04152

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding
GO:0003924Molecular FunctionGTPase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms198.840
SRR2545915Juvenile tuber209.510
SRP108465SRR5643513five period of Gastrodia elata180.970
SRR5643514five period of Gastrodia elata216.090
SRR5643515five period of Gastrodia elata181.660
SRR5643524five period of Gastrodia elata211.120
SRR5643525five period of Gastrodia elata568.410
SRR5643528five period of Gastrodia elata655.020
SRR5643658five period of Gastrodia elata756.170
SRR5643659five period of Gastrodia elata151.810
SRR5643660five period of Gastrodia elata165.080
SRR5643661five period of Gastrodia elata154.640
SRR5643662five period of Gastrodia elata159.940
SRR5643663five period of Gastrodia elata164.500
SRR5643664five period of Gastrodia elata168.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1136.940
SRR6049655Rhizomagastrodiae_C368-T10_good_1152.050
SRR6049656Rhizomagastrodiae_C368-T07_good_1147.010
SRR6049657Rhizomagastrodiae_C368-T07_good_1144.820
SRR6049658Rhizomagastrodiae_C368-T04_good_1148.030
SRR6049659Rhizomagastrodiae_C368-T04_good_1159.770
SRR6049660Rhizomagastrodiae_C368-T01_good_1146.040
SRR6049661Rhizomagastrodiae_C368-T04_good_1148.730
SRR6049662Rhizomagastrodiae_C368-T01_good_1138.130
SRR6049663Rhizomagastrodiae_C368-T01_good_1142.840
SRR6049664Rhizomagastrodiae_C368-T10_good_1179.710
SRR6049665Rhizomagastrodiae_C368-T10_good_1179.710
SRP279888GastroGastrodia elata tuber 192.17
JuvenJuvenile tuber172.97
Mother_GastroMother tuber of Gastrodia elata 437.94
Mother_JuvenMother tuber of Juvenile 367.63