Detail information of GWHGAAEX001277/evm.TU.scaffold_108.51
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|283781652|ref|YP_003372407.1| | 7.00E-21 | serine/threonine protein kinase [Pirellula staleyi DSM 6068] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|743777349|ref|XP_010919104.1| | 0 | PREDICTED: receptor-like protein kinase HERK 1 [Elaeis guineensis] |
| Swissprot | tr|Q9FLW0|Y5241_ARATH | 0 | Probable receptor-like protein kinase At5g24010 (Precursor) |
| trEMBL | tr|K4A5R7|K4A5R7_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si034221m} |
| TAIR | AT5G24010 | 0 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000117 | 1656824 | 1660850 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001277
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12819.6 | Malectin_like | 29 | 386 | 5.80E-33 |
| PF07714.16 | Pkinase_Tyr | 482 | 673 | 5.10E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_CrRLK1L-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.210 |
| SRR2545915 | Juvenile tuber | 7.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.760 |
| SRR5643514 | five period of Gastrodia elata | 9.580 | |
| SRR5643515 | five period of Gastrodia elata | 9.250 | |
| SRR5643524 | five period of Gastrodia elata | 7.340 | |
| SRR5643525 | five period of Gastrodia elata | 8.890 | |
| SRR5643528 | five period of Gastrodia elata | 5.910 | |
| SRR5643658 | five period of Gastrodia elata | 6.670 | |
| SRR5643659 | five period of Gastrodia elata | 15.970 | |
| SRR5643660 | five period of Gastrodia elata | 17.290 | |
| SRR5643661 | five period of Gastrodia elata | 13.360 | |
| SRR5643662 | five period of Gastrodia elata | 17.940 | |
| SRR5643663 | five period of Gastrodia elata | 18.690 | |
| SRR5643664 | five period of Gastrodia elata | 24.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.38 |
| Juven | Juvenile tuber | 18.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.64 | |
| Mother_Juven | Mother tuber of Juvenile | 11.48 |