Detail information of GWHGAAEX001279/evm.TU.scaffold_108.53


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08003.00E-27FOG: Predicted E3 ubiquitin ligase
nrgi|720063600|ref|XP_010275692.1|2.66E-31PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Nelumbo nucifera]
Swissprottr|Q9SUS5|RHA1B_ARATH3.00E-18E3 ubiquitin-protein ligase RHA1B
trEMBLtr|G9DD71|G9DD71_JATCU7.00E-30Ubiquitin-protein ligase E3 {ECO:0000313|EMBL:AEI84328.1}
TAIRAT3G614603.00E-27brassinosteroid-responsive RING-H2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011716744991674966-
Transcript Sequence

Network for GWHGAAEX001279

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module13

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2861291.50E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms32.440
SRR2545915Juvenile tuber28.900
SRP108465SRR5643513five period of Gastrodia elata36.950
SRR5643514five period of Gastrodia elata19.430
SRR5643515five period of Gastrodia elata103.400
SRR5643524five period of Gastrodia elata14.910
SRR5643525five period of Gastrodia elata10.480
SRR5643528five period of Gastrodia elata56.180
SRR5643658five period of Gastrodia elata8.360
SRR5643659five period of Gastrodia elata194.900
SRR5643660five period of Gastrodia elata90.620
SRR5643661five period of Gastrodia elata111.020
SRR5643662five period of Gastrodia elata130.250
SRR5643663five period of Gastrodia elata96.670
SRR5643664five period of Gastrodia elata196.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1104.940
SRR6049655Rhizomagastrodiae_C368-T10_good_1180.070
SRR6049656Rhizomagastrodiae_C368-T07_good_175.270
SRR6049657Rhizomagastrodiae_C368-T07_good_192.120
SRR6049658Rhizomagastrodiae_C368-T04_good_175.490
SRR6049659Rhizomagastrodiae_C368-T04_good_187.170
SRR6049660Rhizomagastrodiae_C368-T01_good_1167.870
SRR6049661Rhizomagastrodiae_C368-T04_good_1123.350
SRR6049662Rhizomagastrodiae_C368-T01_good_167.380
SRR6049663Rhizomagastrodiae_C368-T01_good_1128.820
SRR6049664Rhizomagastrodiae_C368-T10_good_168.260
SRR6049665Rhizomagastrodiae_C368-T10_good_168.260
SRP279888GastroGastrodia elata tuber 61.55
JuvenJuvenile tuber16.08
Mother_GastroMother tuber of Gastrodia elata 75.38
Mother_JuvenMother tuber of Juvenile 57.72