Detail information of GWHGAAEX001281/evm.TU.scaffold_108.56


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|310820940|ref|YP_003953298.1|4.00E-07hypothetical protein STAUR_3683 [Stigmatella aurantiaca DW4/3-1]
nrgi|629112681|gb|KCW77641.1|3.82E-135hypothetical protein EUGRSUZ_D01943, partial [Eucalyptus grandis]
Swissprottr|Q8W2X8|EXP30_ORYSJ2.00E-122Putative expansin-A30 (Precursor)
trEMBLtr|A0A059CHI8|A0A059CHI8_EUCGR1.00E-135Uncharacterized protein {ECO:0000313|EMBL:KCW77641.1} (Fragment)
TAIRAT1G629802.00E-121expansin A18

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011717426221744605+
Transcript Sequence

Network for GWHGAAEX001281

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03330.17DPBB_1651514.50E-22
PF01357.20Pollen_allerg_11632401.90E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0009664Biological Processplant-type cell wall organization
GO:0005576Cellular Componentextracellular region

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.170
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata4.320
SRR5643514five period of Gastrodia elata10.980
SRR5643515five period of Gastrodia elata7.560
SRR5643524five period of Gastrodia elata18.800
SRR5643525five period of Gastrodia elata1.390
SRR5643528five period of Gastrodia elata2.320
SRR5643658five period of Gastrodia elata1.480
SRR5643659five period of Gastrodia elata0.220
SRR5643660five period of Gastrodia elata1.100
SRR5643661five period of Gastrodia elata0.720
SRR5643662five period of Gastrodia elata0.790
SRR5643663five period of Gastrodia elata1.200
SRR5643664five period of Gastrodia elata1.750
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.320
SRR6049655Rhizomagastrodiae_C368-T10_good_118.130
SRR6049656Rhizomagastrodiae_C368-T07_good_18.650
SRR6049657Rhizomagastrodiae_C368-T07_good_14.330
SRR6049658Rhizomagastrodiae_C368-T04_good_19.790
SRR6049659Rhizomagastrodiae_C368-T04_good_110.730
SRR6049660Rhizomagastrodiae_C368-T01_good_15.960
SRR6049661Rhizomagastrodiae_C368-T04_good_15.210
SRR6049662Rhizomagastrodiae_C368-T01_good_111.660
SRR6049663Rhizomagastrodiae_C368-T01_good_110.640
SRR6049664Rhizomagastrodiae_C368-T10_good_121.680
SRR6049665Rhizomagastrodiae_C368-T10_good_121.680
SRP279888GastroGastrodia elata tuber 1.52
JuvenJuvenile tuber3.37
Mother_GastroMother tuber of Gastrodia elata 7.57
Mother_JuvenMother tuber of Juvenile 7.33