Gene detail

Detail information of GWHGAAEX001282/CADD00127.8.gene

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1087	5.00E-18	Cytosolic sorting protein GGA2/TOM1
nr	gi\|110289650\|gb\|ABG66292.1\|	1.29E-17	VHS domain-containing protein, putative, expressed [Oryza sativa Japonica Group]
trEMBL	tr\|Q108V5\|Q108V5_ORYSJ	5.00E-18	VHS domain-containing protein, putative, expressed {ECO:0000313\|EMBL:ABG66292.1}
TAIR	AT5G16880	5.00E-18	Target of Myb protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	1746112	1750315	+

Transcript Sequence
>GWHTAAEX001282 CCACCATGCCTAAATCCTATAAATCACATCACCCTTTATCTCACTATTATTATTTATGATAGAAATAGATATTCATGAACCCTCCACTCTTCTTATTAGTATGATCTTCAATTATCATATGTTCAATATGATAGCTTCTAATATGAATAAAATTTGCACTATAAATTTTCTAATATTCATTTTGAAGTTGCTGAGATGAAAAGTCTTATATTAACTTAATTTCAGTAATGACTAGTGTAATCTCATACATAGCTTTTGTTGCAATAGGTATCACAATAATCCTTCATTCATCTATCTTTTTGTTTATCTTCAAAATTACATTAAAAACTTGATGAGACAAAAACTTTCATCAAACAAGCACATTCACAAAATACTAGGGATGCCATCCAATTCTATAGTTTGACCAATATTCATTCTCTTTAAAACATGAACCATACCACAGTACCCCCTCTAATATCCCAATTTCTTTCAAATGACATGGCAGCTGAACGTGGCCTGAACTGACTTAAGCTTTTTTACCTAAAATCCCCGGCTAACCTAATCTACCGCAACCGGGCGACTTTCGGCAGGAAAAGACTGAGCCTGGGTGAATCGGGACCTCCTCCATTGGCACCATCTCCGACATCGAGCGCGAGGTCGTTGATACGCAGCTCATCGCTCACGACAAGGAGGTCTACGACGTAGAGTGGGGCGGCGTCGGGGTTTTCGCTTCCGTCTCCACAGACGGGTCAGTTTGTATCTTCGATCTTTGCAATTAGGAGCATTCCACCATGATCTATGAGTTCTCTGATCCTCCCAACACCCCGCTCGTTCGCCTGGGCTAGCAGTGAACGGGAAACATCCATAAAGTTGAGCAGAGCGGCACGACTTTCCAGCTGAAAGGAAGCGCGGAATATTTCCTCTTCTTAAATCATTCTGGGTTTTGACTGTAAGCTCGCGCCTATGCGAAACTATGAAGTTTCATCCTTATCTTGTACTTAATTTGTGTTTATGAACTTGATCAATGGTTTTGAAGTGCATACCTAAATTGAGATCGAGGCGAGTGTTGTTTTCTCTTGCATTTTTCTCGACCTGGAGTTCCAAGAATGTGGGGTAGATTCTGTTGGCTGAAGAGGGATGATGGAGGAAGGAGACCTGACGGGATTGTGGAGCTCTTTGCTTGGCTTTTTTGCCAGGAAAATCATCTGAGGCCTTTTGTGGATCTGTACTGGTCTCTGGGATGGGATTGCCTCATTTGCCATGTTGATTTTCTTACCCAGTAAGTAATAATTTGTTTGTTAAATCTGCTGCTATTTGTTTCCGCCATCAAGATTTGCAGTTAGGTTTTATTGGGATTTTGAAAAAAAAAAGTAAGGAAGTTCCTTGGAAGAGCTATCTTTTTGTAGAACTGTGATAGAACTTGTTTTCAACTAGTGATAATATGGAACCGACTTTTTTTTTTATTCAGAGTTTTGAGAGCCGACAGAAAACAAGTCTTTCTGTTTTTCTAATGATAACTTAGTTCATGCGTGTGATAATACTGATGTCTCGAGAGAAGCATGTTTATAGCTGGACATTAAAGGTTTTAGCAGATGGCCATTGATGGCTTCCAAAAGGAAAATATAAAGATGCAAAAAGAATATAACATATAGCTATAATGACACTTGGTTTATCTATTGGAATGTTTTGGGAAAGTTCAAAAGATGGTTTCATATATCTTGATATGATGTTGATTGCTTTTGTGAATTAGTAAACATTAACAATACTTCACAAAATAACTAGTATAAGTTGATGCATTGTTAGCTTATAAATTGAAAAAAATGTTGTTCCCTATATTATATGCTAACACAATTATTTTGTAATAAGCCTTTCAGCATTCCAATTAAGGTTGTGATTAGTTGGAAAGGTGAGGATAAAGTGATTTTAATTGATCTGAATAATGAGTCTTTTGTGTATTTAAATTCGTGTGATATAAATGACTTTAATTTGCTCAATTTTTTTACATTAAAGGGCTTTAAGCACCATTTGTGTAGCAGTAGTCCAAGGAAATTTTTTGACATTAAAAAGCTTTAAGCACCATTTGTGAAGGTAAAATTATTTTATGATGAGCTTGCTTGGATTTTCAAGTTTCTTGTGTTCTTATTGGCTTAATGTTTTGATTCATCTGTAAAATTGTTTCTTGTGTTCTTATTGGAGAAACAATCTTAATCAAGCTTCCTATCTTGAAAGAGCTGCTTATGCCACCAGCACAAAGAGCCACATGCTTTGCGACGGTCAAATTTTTTTCTTGAAACAAAGAGTTTGGTTGTTATTTTGTTACTCTCTACGAGTCAAAGTAGCATTTGTCCATTCGATTGATACATATTTTCTTGTTAAAATAGTTTAATAAATTTCAGCAAATGCACTTTCCAGCATTATAATACTGAAAATTCATAATGATACTTTTTCCAAGCTTTCTCTGAGGTTGTAGCATGGCGGGTGCTTGATGAAATGGTAAAACTTATAGAAGATCTTCAAACAGTAGCCAGCAATCGGAACAAGGCTCTTGTTCTAATTGAAGCATGAGGAAAATCTGGAGTTGAACTTAGATATTTGCCAATTTATGAGGAAACCTATAAGGTATTAAAGTTTCTATTATTGATTGGATATATGTTAAGATAATACTCAATGAGAATATACAAGTTCTTCAGGCATGTAAGTTACTTTGATTGCAGAATAGTTAATGCTTATCCATCATGTATATTAGCTACTTTACAATGTTGCTTTTTTAGTTTCATTCAAACTTAGAAAAGTATCATTTTGGCAAAGATGTTTTAACAAGCTGTTCATATTGCTTTTCCAGATTCATTACCATCACAATTGTATAACATTTAGTTGCGGAAGGCGCTCGCAACGTTTTCTTTTTTTTTTTATCTAAAATATTTTCTGCTTTTTTTCTTGTAAGCATTTGAATATTTTTATGCATCTTTAATAAGTATTTAAGTGCTCTAAGACTCCTCTCTCTACAGGAAGAGTTTGGTCTCCGCTTTTGCAATTCTGTCTCCTCATATTGAATTGGACGAGAAGACAGAATATTTTTGTCCGTAAAGTTCTTCTGCAGTTAAGTTTTTTTTTCCTTAATTTAAGATTTTAATGGCATCAAGAATAGCTTGATACCCTCTAGCAACCGATGTCTGTGAAACTTTTGTTATTGAAGGTAATTCATTTACAAATTTCTTAGCTTTACATGAAATATTTTGCTGTCATTTCGGTTGAGTGGAAATAATGAATGAGATTGGGCTGCATGCCATTTAACTGTTCTTCTTCTTCTTCTTCCTCTTACTCTTCTTCCTCTTCTTATTTGAGAATAAATGACTTTTTTGGAACTAGATTAGTTGTGAACATCCAAAATCAGAAACTCCCTCACCTGAATCTTCATGCAGCTCCTCCTCCTGTAAAGATATGAAGTGGTGGGTGAAAGGGGTTCAGCCTAACATGAAGTAGATCTCTTCAGCTCATAATTGATGCCAAACTCAGAAAAAAGGACTTCAGTAATTGCAATGTGAAATTTAAGGATGCATTGGTAAATTGCAGTCTTGGGGAAGCCAAAGGGCTAGAAGTTTGAATTAATGACCTTGGTTGCAAACAAGGACCTCCATTTTTGTTATTCCAAGAAGGAAGAAGTTCCCAGCTTTGCAGAAAACAAGACTCTCTTAGCTGTAGCATCTGGGGAATGATCAGATTCTTTTTTTAGATTCATGTACATAAAATTTTGATGAAAATGATTCATTTTTCTTTTTTAATTATTGAAATGAGATATCATATTTTTTTCTTCTTCCTTTAAGATGCATGTACACAACTTTTTTGTAACCAAACAGTATTTTTGATAATTTAGTTATTCTTTTTTTCAACTTTA

Network for GWHGAAEX001282

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX001282
PPCLNPINHITLYLTIIIYDRNRYSTLHSSYYDLQLSYVQYDSFYENLHYKFSNIHFEVAEMKSLILTFQLVSHTLLLQVSQSFIHLSFCLSSKLHKLDETKTFIKQAHSQNTRDAIQFYSLTNIHSLNMNHTTVPPLISQFLSNDMAAERGLNLKLFYLKSPANLIYRNRATFGRKRLSLGESGPPPLAPSPTSSARSLIRSSSLTTRRSTTSGAASGFSLPSPQTGQFVSSIFAIRSIPPSMSSLILPTPRSFAWASSERETSIKLSRAARLSSKEARNISSSIILGFDCKLAPMRNYEVSSLSCTFVFMNLINGFEVHTIEIEASVVFSCIFLDLEFQECGVDSVGRGMMEEGDLTGLWSSLLGFFARKIIGLLWICTGLWDGIASFAMLIFLPSKFVCICCYLFPPSRFAVRFYWDFEKKKGSSLEELSFCRTVIELVFNYGTDFFFYSEFEPTENKSFCFSNDNLVHACDNTDVSREACLLDIKGFSRWPLMASKRKIRCKKNITYSYNDTWFIYWNVLGKFKRWFHISYDVDCFCELVNINNTSQNNYKLMHCLINKKCCSLYYMLTQLFCNKPFSIPIKVVISWKGEDKVILIDLNNESFVYLNSCDINDFNLLNFFTLKGFKHHLCSSSPRKFFDIKKLAPFVKVKLFYDELAWIFKFLVFLLACFDSSVKLFLVFLLEKQSSSFLSKSCLCHQHKEPHALRRSNFFLETKSLVVILLLSTSQSSICPFDYIFSCNSLINFSKCTFQHYNTENSYFFQAFSEVVAWRVLDEMVKLIEDLQTVASNRNKALVLIEAGKSGVELRYLPIYEETYKVLKFLLLIGYMLRYSMRIYKFFRHVSYFDCRIVNAYPSCILATLQCCFFSFIQTKSIILAKMFQAVHIAFPDSLPSQLYNILRKALATFSFFFYLKYFLLFFLAFEYFYASLISIVLDSSLYRKSLVSAFAILSPHIELDEKTEYFCPSSSAVKFFFPFKILMASRIAYPLATDVCETFVIEGNSFTNFLALHEIFCCHFGVEIMNEIGLHAILFFFFFFLLLFFLFLFENKLFWNISCEHPKSETPSPESSCSSSSCKDMKWWVKGVQPNMKISSAHNCQTQKKGLQLQCEIGCIGKLQSWGSQRARSLNPWLQTRTSIFVIPRRKKFPALQKTRLSLHLGNDQILFLDSCTNFDENDSFFFFNYNEISYFFLLPLRCMYTTFLPNSIFDNLVILFFNF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.340
SRP064423	SRR2545915	Juvenile tuber	9.060
SRP108465	SRR5643513	five period of Gastrodia elata	7.210
	SRR5643514	five period of Gastrodia elata	14.220
	SRR5643515	five period of Gastrodia elata	9.410
	SRR5643524	five period of Gastrodia elata	17.000
	SRR5643525	five period of Gastrodia elata	6.880
	SRR5643528	five period of Gastrodia elata	5.720
	SRR5643658	five period of Gastrodia elata	7.700
	SRR5643659	five period of Gastrodia elata	6.840
	SRR5643660	five period of Gastrodia elata	7.090
	SRR5643661	five period of Gastrodia elata	5.520
	SRR5643662	five period of Gastrodia elata	5.770
	SRR5643663	five period of Gastrodia elata	6.950
	SRR5643664	five period of Gastrodia elata	6.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.020
SRP279888	Gastro	Gastrodia elata tuber	14.55
	Juven	Juvenile tuber	9.40
	Mother_Gastro	Mother tuber of Gastrodia elata	14.88
	Mother_Juven	Mother tuber of Juvenile	11.66