Gene detail

Detail information of GWHGAAEX001284/evm.TU.scaffold_108.57

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0495	HAT repeat protein
nr	gi\|672178533\|ref\|XP_008809401.1\|	PREDICTED: protein STABILIZED1 [Phoenix dactylifera]
Swissprot	tr\|Q9ZT71\|STA1_ARATH	Protein STABILIZED1
trEMBL	tr\|H6UJ39\|H6UJ39_CAMSI	Putative pre-mRNA splicing factor {ECO:0000313\|EMBL:AEY85031.1}
TAIR	AT4G03430	pre-mRNA splicing factor-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	1754764	1761549	-

Transcript Sequence
>GWHTAAEX001284 ATGGTTTTCATCCAAGGATTCGATCGCAAATCCATAGCTCTTGAGTTGAATCCGATCTCCACATCCCTCAGCTCCTTGAAAATCGCCATCGAGGACCAAACCGGAGTGCCTGTTCATCTCCAGCGGCTCTTCCTTGCCTCCCGTCGCCTGGTTCCACCCTTCGCCACTGGCAATGAATCCACCACGACTCTCACCGATCTCGCCGTCCGACCTGATTCCACCCTAACCCTCTTCATCCCTCTTCTTGGTGGCATGCAGTCCTCTTCCGTTCCAGCGAGGCCTCCGCGGTATGAGTTCCTCAACTCAAAACCCCCTCCTAATTACGTCGCCGGTCTCGGACGTGGTGCCACGGGCTTCACGACCCGCTCCGATATTGGCCCTGCCCGCGCTGCTCCTGATTTACCCGATCGTTCAGTCACAGCGATCGGGGCCTCTGCCACTGCTGGTGCTGGCCGCGGTCGAGGAAAAGGTCCAGGAGGCGAGGAAGACGAGGAAGAGGAGGCCGATGATAAGGGTTATGATGAGAACCAGAAATTCGATGAGTTCGAGGGGAACGATGTAGGTCTCTTCGCTTCAGCCGAGTATGACGAGGATGACAAAGAGGCGGATGCGGTGTGGGAGAGCATCGACAAGAGGATGGATTCCAGGAGAAAGGACAGGAGGGAGGCGAGGCTGAAGCAGGAGATTGAGAAGTATCGTGCCTCGAACCCTAAGATCACTGAGCAGTTCGCCGATCTCAAGAGGAAGCTTGCCGATGTGACCCCAGCGGAGTGGGATAGCATTCCCGAGATCGGGGATTACACGCTCAGAAACAAAAAGAAGAGGTTTGAGAGCTTTGTGCCTGTGCCAGATACCCTGCTTGAGAAGGCTAGGCAGGAGAAGGAGCATGTGACTGCCCTAGACCCTAAGAGCCGTGCCGTGGGCGGAACTGAGACTCCTTGGTCACAAACACCTGTCACAGATCTCACTGCCGTAGGAGAAGGCAGAGGTACAGTTCTTTCTTTGAAGCTTGATAGATTGTCTGATTCTGTGTCGGGATTGACGGTGGTGGATCCAAAAGGTTACTTGACTGATCTCAAAAGCATGAAAATAACTAGTGATGCTGAGATTTCGGACATCAAGAAGGCAAGGCTGTTGCTGAAGTCGGTTATCCAAACAAACCCTAAGCATCCTCCTGGATGGATAGCAGCTGCAAGGCTGGAGGAGGTTGCGGGAAAAACTCAGGTGGCTAGGCAATTGATTCAGAAAGGGTGTGAAGAGTGCCCGAAGAATGAAGATGTTTGGATGGAGGCTTGTCGGTTAGCAGGCTTAATAAGCCCTGAAGAGGCTAAAGCAGTGATTGCGAAAGGGGTGAAAGCTAATCCAAATTCTGTGAAATTGTGGATACAGGCTGCAGATTTAGAAAAAAATGTTTCAAATAAAAGTCGTGTCTTGAGGAAGGGGTTAGAGCACATTCCTGATTCAGTCAGGCTGTGGAAGGCAGTTGTTGAATTGGCTAATGAGGAGGATGCAAGGGTTTTACTTCACAGGGCTGTGGAATGCTGCCCGCTTCATGTAGAGCTGTGGCTTGCGCTTGCAAGACTAGAAACATACGAACAAGCAAAGAAGGTGCTCAACCGTGCAAGAGATAAGCTCTCCAAGGAGCCATTGATATGGATAACAGCAGCAAAACTTGAGGAGGCCAATGGTACAATTGGCTCAGTTAAGAAGCTTATTGAGAGAGGTATTCGAAATTTGCAGAAGGATGGGGTTGAGATTGATCGTGAGGCTTGGATGAAAGAGGCAGAAGCTGCTGAAAGGGCTGGATCTGTCGCCACTTGCCATGCCATTATCAGCCATACCATTGGGATAGGTGTGGAAGAAGAAGATCGGAAAAGGACATGGGTTGCTGATGCCGAAGAGTGCAAGAAGCGAGGTTCAATTGAGACAGCACGAGCTATTTATGCACATGCACTTTCAGTTTTTCTGACAAAAAAGAGTATTTGGCTCAAGGCAGCACAGCTGGAGAAGAGCCACGGGACTAGAGAATCCCTTGATAATCTTCTTAGGAAGGCAGTTACCTACCGACCTCAAGCAGAAGTGCTATGGTTAATGGGTGCAAAAGAGAAATGGCTTGCAGGAGATGTCCCCGGAGCTAGAGCAATTCTTCAGGAAGCATATGCATCAATTCCAAATTCTGAAGAGATATGGTTAGCTGCATTTAAGCTTGAATTTGAGAATAATGAACCTGAGAGAGCAAAAATGCTTTTGGCTAAAGCCAGAGAGAGAGGGGGCACTGAGAGGGTTTGGATGAAGTCTGCAATTGTGGAGAGAGAACTAGGGAACTCTCCTGACGAGAAAAGGTTGCTAGAAGAAGGAATCAAGTTGTTCCCTTCATTTTTCAAGTTGTGGCTAATGCTAGGACAGATGGAAGAAAGGCTCGGTAATGCTGAACAGGCAAAAGATACTTATGAGAGAGGTCTTAAGAATTCACCTAATTGTGTTCCACTTTGGCTTTCTATTGCTAATTTAGAAGAAAGAGTCAATGGTTTGAGCAAAGCTCGTGCAGTTCTTACCATGGGCAGAAAAAGAAATCCCCAAAACCCTGAGCTCTGGCTGGCTGCTATTCGTGCTGAGTTGAAGCATGGGAACAAAAAGGAAGCAGATGCATTGATGGCCAAAGCTCTACAGGAATGCCCTACAAGTGGGATTTTATGGGCTGCTTCTATAGAAATGGTTCCCAGGCCCCAGCGCAAAGGCAAAAGTGCAGATGCTCTGAAACGATCTGATCATGATCCTCATGTTATAGCTGCTGTAGCTAAATTGTTTTGGCATGATAGAAAGGTTGAGAAGGCTAGAAACTGGTTTAACAGGGCGGTCACTCTAGCACCGGATATTGGCGACTTCTGGGCATTATTCTACAAGTTTGAACTCCAGCACGGTGCTGATGAGACGCAGAAAGAAGTTTTGAAGAGATGCATTGCTGCTGAGCCAAAACATGGGGAGAGATGGCAAGCAATTTCCAAAGCTGTGGAAAATTCTCATCTTCCAATAGAAACCATTTTGAAAAAGGCTGTAGTTATTCTCGGTAAAGAAGAAAGCTCAAATGCCTTAGATGGTGTGAGGTTCTCTTATATTAAACTTATCGTGGAAGAGAAAGCTTTCGGAGGCCAAAACCTACAATGGAAGGTGAAGCAGAAGAGCTGCGCGCTAAGCAAGGGTCTTGATGCCTTTGACGGAAATGGAACGTGGATTTTGTCTGGAAGCACTGGATCTGAGGTAGAAACGGAGAAAGGAGATAGAGGTGGGCAGTTCTCCGAGGCCGGGAAGGCTGCGGCGCCGCTGGAAATGAAGAGCCAGAGCCCGCCTTCTATAAAGTAAATCTGTGATTAAAAAAAGGCTTTGTGCATCTTTATGATTCTTTACTTGCTGGCATTATAAATTTATGAAACAAAACGACCTCATTAATCAGTAGTTTATAATAATTGATTTATTATAATGTCTCT

Network for GWHGAAEX001284

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.22	ubiquitin	2	78	1.80E-05
PF06424.11	PRP1_N	104	270	2.60E-55
PF13181.5	TPR_8	795	827	0.0018

Protein Sequence

>GWHPAAEX001284
MVFIQGFDRKSIALELNPISTSLSSLKIAIEDQTGVPVHLQRLFLASRRLVPPFATGNESTTTLTDLAVRPDSTLTLFIPLLGGMQSSSVPARPPRYEFLNSKPPPNYVAGLGRGATGFTTRSDIGPARAAPDLPDRSVTAIGASATAGAGRGRGKGPGGEEDEEEEADDKGYDENQKFDEFEGNDVGLFASAEYDEDDKEADAVWESIDKRMDSRRKDRREARLKQEIEKYRASNPKITEQFADLKRKLADVTPAEWDSIPEIGDYTLRNKKKRFESFVPVPDTLLEKARQEKEHVTALDPKSRAVGGTETPWSQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITSDAEISDIKKARLLLKSVIQTNPKHPPGWIAAARLEEVAGKTQVARQLIQKGCEECPKNEDVWMEACRLAGLISPEEAKAVIAKGVKANPNSVKLWIQAADLEKNVSNKSRVLRKGLEHIPDSVRLWKAVVELANEEDARVLLHRAVECCPLHVELWLALARLETYEQAKKVLNRARDKLSKEPLIWITAAKLEEANGTIGSVKKLIERGIRNLQKDGVEIDREAWMKEAEAAERAGSVATCHAIISHTIGIGVEEEDRKRTWVADAEECKKRGSIETARAIYAHALSVFLTKKSIWLKAAQLEKSHGTRESLDNLLRKAVTYRPQAEVLWLMGAKEKWLAGDVPGARAILQEAYASIPNSEEIWLAAFKLEFENNEPERAKMLLAKARERGGTERVWMKSAIVERELGNSPDEKRLLEEGIKLFPSFFKLWLMLGQMEERLGNAEQAKDTYERGLKNSPNCVPLWLSIANLEERVNGLSKARAVLTMGRKRNPQNPELWLAAIRAELKHGNKKEADALMAKALQECPTSGILWAASIEMVPRPQRKGKSADALKRSDHDPHVIAAVAKLFWHDRKVEKARNWFNRAVTLAPDIGDFWALFYKFELQHGADETQKEVLKRCIAAEPKHGERWQAISKAVENSHLPIETILKKAVVILGKEESSNALDGVRFSYIKLIVEEKAFGGQNLQWKVKQKSCALSKGLDAFDGNGTWILSGSTGSEVETEKGDRGGQFSEAGKAAAPLEMKSQSPPSIK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12855	PRPF6, PRP6	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0000398	Biological Process	mRNA splicing, via spliceosome
GO:0005515	Molecular Function	protein binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.990
SRP064423	SRR2545915	Juvenile tuber	28.220
SRP108465	SRR5643513	five period of Gastrodia elata	30.370
	SRR5643514	five period of Gastrodia elata	26.790
	SRR5643515	five period of Gastrodia elata	26.160
	SRR5643524	five period of Gastrodia elata	26.350
	SRR5643525	five period of Gastrodia elata	14.820
	SRR5643528	five period of Gastrodia elata	17.970
	SRR5643658	five period of Gastrodia elata	16.320
	SRR5643659	five period of Gastrodia elata	29.230
	SRR5643660	five period of Gastrodia elata	31.460
	SRR5643661	five period of Gastrodia elata	27.470
	SRR5643662	five period of Gastrodia elata	27.640
	SRR5643663	five period of Gastrodia elata	25.120
	SRR5643664	five period of Gastrodia elata	27.930
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.650
SRP279888	Gastro	Gastrodia elata tuber	29.06
	Juven	Juvenile tuber	43.41
	Mother_Gastro	Mother tuber of Gastrodia elata	21.14
	Mother_Juven	Mother tuber of Juvenile	31.96