Gene detail

Detail information of GWHGAAEX001285/evm.TU.scaffold_108.58

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743834833\|ref\|XP_010935636.1\|	7.99E-84	PREDICTED: clathrin light chain 2-like [Elaeis guineensis]
Swissprot	tr\|Q5Z402\|CLC2_ORYSJ	2.00E-57	Clathrin light chain 2
trEMBL	tr\|M0RP97\|M0RP97_MUSAM	5.00E-73	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P04170_001}
TAIR	AT2G40060	3.00E-55	Clathrin light chain protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	1763481	1784041	+

Transcript Sequence
>GWHTAAEX001285 GAATAAATAAGGCTACCTACACTGGAGACGGCCAGAAACGAACCAGGAGAGCTGCAACAGTTGGAAACTGGAGAGAGAAATTGATGTCTTCCTCCTTTGACGCCGATGAGGTCTCGAGGGTTTCAAACGACCCTTTTGGTGAAAACGGGTATACTGGATCCGACCCTCGGCCACCCTCCCATGGCTACGCATCCTACGCAGCCTTCTCCGCTGATGAGGACGACAAGGACCCCATTCATATCTCTGCCGATGCCTCTGGCTTCGTCGGCTTCGTTCACGAGGACATCTCTCCAACACCCGAGGGATACGGCTATCTCTCCGACACCCATCTGGGATTCGACTCGGCTGCTTCCCCATTCTCGATGCCGAATTCCAATGGAAGTGCTTATGATGAGCGGATGAACGCTGTTGAATATTTTTCCGATGGTCCGACCCTTCAATCTCCCGACGAGATGCACTCCGATCAAGGATTTTTCAGACGGGAATGGCGCCGCCAAAACGCGATCATTCTCGAGGAGAAAGAGAGGGTGGAGAAAGAGCTGCGCAGCGAAATCATTCTGGAAGCAGAGGAATACAAGAAATCCTATCACGAGAAGCGGAAGCTAATTTGCCAAACAAACTGGGCTCAGAACAGAGAGAAGGAAAAGGTGTTAGTAGCCAACCATGAGAAGTTTCATGCTAATGCTGATAAGCACTACTGGAAAGCCATAGCAGATCTCATCCCGAACGAAGTGCCAAACATGGAGAAGAAAATGAAGAAGGAGCAGCTGAATCAGCTGCAGGATAAGAAGAAGCCCTCCATCACCATCCATCAGGGACCAAAACCCGGCAAACCCACTGATCTCTCCAGGCTGCGGCGTTTGCTCATGAAACTAAAGCATGATGCTCCTCCCCACTTGTCGGCTACTCCAGCTTCGCCTAATCCTGCTCCAGCGTCCTCTGATATTGCTGCTACTCCCAGCAAGGTAACGGTTCCCGGGTAAAGGCAAGTGTGTGCCATTTTTTGCTTAGATTAATGCTTTTTAAACTCGCTGACATGTATCCTGAGCACTACCCCTTCCTCCACGCTGGCCAAAGAGCTCTCTGACCAACAAGAAGGAATAGGTGAATGCTGGTTATATATCAGCGGGCTTGTAAAGCACTGCTCTCCAATATGAGTTTGCAAATGTCTACATTTTCGATAACATATTGATGCATTTATCAGCTGCTGGCTGCAAAAACATTGTTTGTGGCCATTTTTTGTTTTCTATATTTGCACACAGGCGCCATGAGCCATTTGAGCATGATTGTAATTTTGTCGAACCTATTTTCTTCTTTTTTGTTTCTTTTGAAGTATAGAGCACGATGTTTTTGAAGAGAAATGTAGGAAGAACAATGCATTTAACTGATAGCTTTGAAACATTTGTAGATGTTAACAGTTCCTCGTGGGGCCGTTTTTAGCTATTTGGTGCAGGCATTTCTTACTTGCACGACACCCAAAACTTTATAGGATTGTATATGTGACACAAATATCAACGATACGTGTTGGTGTTATATTTGTAAAGATTTTAATTTAATTGGTACATTTTTTTCAAATAATTGCTCGGGTGCGGCATCAAAGTGCCTCTTCGGCTTAAGCATTTGGCCACCAATCTCAACTTCATGACTTTGTGGGATTGCAATGTGTGATTTGCTTGTCGGAAGGGATTGCCCATGTGATGATGTTGGCCATTGGGAGAGCTGTTGCATGACTCCATTTCATAGTTCTACTCACCAATGTGGTTCAGGATGCTATCGTCACCCACTGTCGAATGTAGCTGCACATTTGATGATGTTGAACTTGCATTGCTCTTCTAACTTGTCTTCTCGTCTGTTTCTATAAATATAGGCAAATAACAATCTTTGATAGATGCATCTTCCATTTCATTTTAGTGCGTGATAAGTAAAGTTATTCAAAGTATCCATTCTAGCTGGGTTACATTCCAGGGCTTTGCTCATAATAGTTCTTCCATCCTAGCTCTACCCAAAGGAACTACTTTGCCAACCTCAACAATCTTGACAACTTTGGGAATTTCATTTTGATACCATGCTAGAGGATCATAAATAGTAGCGGTTGAAACCCAAAACATCCCAAGAGAAAGTCTTTTACTAATCTGAATTTTCTCTAAACTATCTTCACGGCAGCCACAGCTGACACTTGGACGCTAAGTGCAAGTTGTATTTGGGAGCATGCCTTGCGTGCTTGGGCGCCCTGAACCGTAGGCGGTTTCATGAAAATTACTGCTTGACCTGCGTTCAGGCGCGTGCTTGCCTATGTGTGCAACTGTAAATGAACCATAGATGAATCACTAGTTCATTCATGAAATTCTCTACGGTTCATTTATCAAAGCTTAATTGCTCAGCCATGTGTCATTATGTATCTAGGCCAAAAACGTAACAAATTTGTACTCTCCTACACTTGATATTTTGGAACATTGGTTTCATGAAATATGAGCTAATATGTTGCTTTCACTCAGTGATCTGTTTACCAGCTGCGAGGTGAACTTCATTACCAAAAATTAATTTTCATTTAAAAAATGATGAAAAAAATTTACATTTCAAAAAAATTTACATATTCTATTCAGTATCAATAAAATTTTTTACTCTTCGTTTCTTATAAGTGAGCCCAAATAGAAGTATAATATACATTCTTTCTTATATAAGTGTCTACAGCATATAATAGCATTATTGCATATATACTTGGTTGAGCTTAACTAAAATTTTATCTATTTATTAAATTAAATATGCAAAATAAGTATAATTTTA

Network for GWHGAAEX001285

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01086.16	Clathrin_lg_ch	133	215	5.40E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.180
SRP064423	SRR2545915	Juvenile tuber	34.930
SRP108465	SRR5643513	five period of Gastrodia elata	28.180
	SRR5643514	five period of Gastrodia elata	34.020
	SRR5643515	five period of Gastrodia elata	29.210
	SRR5643524	five period of Gastrodia elata	30.920
	SRR5643525	five period of Gastrodia elata	30.150
	SRR5643528	five period of Gastrodia elata	35.620
	SRR5643658	five period of Gastrodia elata	26.330
	SRR5643659	five period of Gastrodia elata	30.380
	SRR5643660	five period of Gastrodia elata	25.560
	SRR5643661	five period of Gastrodia elata	33.310
	SRR5643662	five period of Gastrodia elata	28.390
	SRR5643663	five period of Gastrodia elata	29.100
	SRR5643664	five period of Gastrodia elata	27.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	58.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.820
SRP279888	Gastro	Gastrodia elata tuber	28.65
	Juven	Juvenile tuber	32.51
	Mother_Gastro	Mother tuber of Gastrodia elata	25.89
	Mother_Juven	Mother tuber of Juvenile	29.13