Detail information of GWHGAAEX001288/evm.TU.scaffold_108.61
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|17232326|ref|NP_488874.1| | 8.00E-21 | hypothetical protein all4834 [Nostoc sp. PCC 7120] |
| KOG | KOG0283 | 0 | WD40 repeat-containing protein |
| nr | gi|672107528|ref|XP_008776093.1| | 0 | PREDICTED: WD repeat-containing protein 44-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|P49178|GBB_MAIZE | 2.00E-11 | Guanine nucleotide-binding protein subunit beta |
| trEMBL | tr|M0S0S6|M0S0S6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P17680_001} |
| TAIR | AT3G15470 | 0 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000117 | 1855783 | 1884240 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001288
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 360 | 391 | 0.00022 |
| PF00400.31 | WD40 | 472 | 507 | 4.50E-06 |
| PF00400.31 | WD40 | 513 | 550 | 0.0028 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.260 |
| SRR2545915 | Juvenile tuber | 9.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.900 |
| SRR5643514 | five period of Gastrodia elata | 8.490 | |
| SRR5643515 | five period of Gastrodia elata | 8.050 | |
| SRR5643524 | five period of Gastrodia elata | 7.290 | |
| SRR5643525 | five period of Gastrodia elata | 7.700 | |
| SRR5643528 | five period of Gastrodia elata | 6.680 | |
| SRR5643658 | five period of Gastrodia elata | 6.780 | |
| SRR5643659 | five period of Gastrodia elata | 14.560 | |
| SRR5643660 | five period of Gastrodia elata | 14.650 | |
| SRR5643661 | five period of Gastrodia elata | 12.770 | |
| SRR5643662 | five period of Gastrodia elata | 12.100 | |
| SRR5643663 | five period of Gastrodia elata | 19.580 | |
| SRR5643664 | five period of Gastrodia elata | 15.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.51 |
| Juven | Juvenile tuber | 15.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.39 | |
| Mother_Juven | Mother tuber of Juvenile | 15.84 |