Detail information of GWHGAAEX001290/evm.TU.scaffold_108.65


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|297621203|ref|YP_003709340.1|6.00E-06serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
KOGKOG07000Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase
nrgi|255560515|ref|XP_002521272.1|0protein phosphatase 2c, putative [Ricinus communis]
Swissprottr|Q5Z8P0|P2C60_ORYSJ0Probable protein phosphatase 2C 60
trEMBLtr|B9S5K3|B9S5K3_RICCO0Protein phosphatase 2c, putative {ECO:0000313|EMBL:EEF41128.1}
TAIRAT4G385200Protein phosphatase 2C family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011719679802010506+
Transcript Sequence

Network for GWHGAAEX001290

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00481.20PP2C803241.80E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.530
SRR2545915Juvenile tuber28.440
SRP108465SRR5643513five period of Gastrodia elata30.390
SRR5643514five period of Gastrodia elata33.520
SRR5643515five period of Gastrodia elata37.660
SRR5643524five period of Gastrodia elata30.080
SRR5643525five period of Gastrodia elata55.390
SRR5643528five period of Gastrodia elata71.360
SRR5643658five period of Gastrodia elata47.540
SRR5643659five period of Gastrodia elata23.430
SRR5643660five period of Gastrodia elata25.290
SRR5643661five period of Gastrodia elata24.650
SRR5643662five period of Gastrodia elata29.380
SRR5643663five period of Gastrodia elata30.500
SRR5643664five period of Gastrodia elata25.930
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.160
SRR6049655Rhizomagastrodiae_C368-T10_good_133.120
SRR6049656Rhizomagastrodiae_C368-T07_good_131.300
SRR6049657Rhizomagastrodiae_C368-T07_good_125.900
SRR6049658Rhizomagastrodiae_C368-T04_good_127.110
SRR6049659Rhizomagastrodiae_C368-T04_good_131.200
SRR6049660Rhizomagastrodiae_C368-T01_good_128.950
SRR6049661Rhizomagastrodiae_C368-T04_good_130.400
SRR6049662Rhizomagastrodiae_C368-T01_good_128.600
SRR6049663Rhizomagastrodiae_C368-T01_good_129.440
SRR6049664Rhizomagastrodiae_C368-T10_good_136.820
SRR6049665Rhizomagastrodiae_C368-T10_good_136.820
SRP279888GastroGastrodia elata tuber 26.52
JuvenJuvenile tuber16.06
Mother_GastroMother tuber of Gastrodia elata 46.50
Mother_JuvenMother tuber of Juvenile 37.46