Detail information of GWHGAAEX001291/evm.TU.scaffold_108.66


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08002.00E-79FOG: Predicted E3 ubiquitin ligase
nrgi|672160500|ref|XP_008800032.1|1.20E-105PREDICTED: NEP1-interacting protein 1-like [Phoenix dactylifera]
Swissprottr|Q8GT75|NIP1_ARATH1.00E-89NEP1-interacting protein 1
trEMBLtr|M0RNE7|M0RNE7_MUSAM2.00E-96Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P01160_001}
TAIRAT5G660702.00E-79RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011720299982032570-
Transcript Sequence

Network for GWHGAAEX001291

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21842271.10E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms21.260
SRR2545915Juvenile tuber201.760
SRP108465SRR5643513five period of Gastrodia elata24.410
SRR5643514five period of Gastrodia elata24.830
SRR5643515five period of Gastrodia elata25.720
SRR5643524five period of Gastrodia elata26.450
SRR5643525five period of Gastrodia elata14.380
SRR5643528five period of Gastrodia elata10.010
SRR5643658five period of Gastrodia elata8.600
SRR5643659five period of Gastrodia elata35.690
SRR5643660five period of Gastrodia elata37.470
SRR5643661five period of Gastrodia elata28.680
SRR5643662five period of Gastrodia elata20.570
SRR5643663five period of Gastrodia elata26.040
SRR5643664five period of Gastrodia elata21.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.000
SRR6049655Rhizomagastrodiae_C368-T10_good_125.730
SRR6049656Rhizomagastrodiae_C368-T07_good_124.130
SRR6049657Rhizomagastrodiae_C368-T07_good_122.060
SRR6049658Rhizomagastrodiae_C368-T04_good_116.220
SRR6049659Rhizomagastrodiae_C368-T04_good_112.630
SRR6049660Rhizomagastrodiae_C368-T01_good_113.020
SRR6049661Rhizomagastrodiae_C368-T04_good_119.160
SRR6049662Rhizomagastrodiae_C368-T01_good_126.210
SRR6049663Rhizomagastrodiae_C368-T01_good_117.760
SRR6049664Rhizomagastrodiae_C368-T10_good_128.380
SRR6049665Rhizomagastrodiae_C368-T10_good_128.380
SRP279888GastroGastrodia elata tuber 52.75
JuvenJuvenile tuber104.91
Mother_GastroMother tuber of Gastrodia elata 75.86
Mother_JuvenMother tuber of Juvenile 188.81