Gene detail

Detail information of GWHGAAEX001293/evm.TU.scaffold_108.69

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|297622398\|ref\|YP_003703832.1\|	aconitate hydratase 1 [Truepera radiovictrix DSM 17093]
KOG	KOG0452	RNA-binding translational regulator IRP (aconitase superfamily)
nr	gi\|743775510\|ref\|XP_010918136.1\|	PREDICTED: aconitate hydratase, cytoplasmic-like [Elaeis guineensis]
Swissprot	tr\|Q9SIB9\|ACO2M_ARATH	Aconitate hydratase 2, mitochondrial (Precursor)
trEMBL	tr\|M0RNE8\|M0RNE8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P01170_001}
TAIR	AT2G05710	aconitase 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	2085643	2108209	+

Transcript Sequence
>GWHTAAEX001293 ACTGCCGGCTAACTTTTTATTGCAGCGTCGTGAGAAACCCTACCCCAGAAAAGGCCCCCCGAAAGCAGCGCGCTGACCACACGCCCTCCAAAATTCCAAATAAGCGCCTCCTCTTCCTCCTAATTCTGTCTCGCTGGCTTTCTTCTCTCTTCTTCCCGTAGCCGTCTCTCCCACGACTCATTGCCACAAAGCAAACATGACGCCGATCGCGGCGGCGTTCATGAGATCCCGATCCAACATCGCGTCCTCCCTCTCTGCTGCTGCGAACTGCTCCGGCTTCGTATCGCTGGCCGGATCTTCGTCCTCACCTGCAGCAGCACGTCGTTTTCATGACTGGAGATATCCGCTCAGCCACCGCGCCGCAATTCGCTCCTCGGCCGCTGTTGTGGATCGATTCGAACGCCGCTTTGCCACCGAGGCATCGCGGAACTCGTACGAGGGCATCCTGACGCCGCTGCCCAAACCTGGCGGCGGGGAGTTTGGGAAGTTTTACAGTCTGCCTGGTCTTGGAGATCCTAGGATCGATCGGCTACCTTATTCGGTGAGGATTCTGCTGGAGTCAGCGATCCGGAATTGCGACGAGTTTCAGGTTACGGGGAAGGATGTGGAAAAGATTATCGATTGGGAAAATTCTGCTCCAAAGCAGGTGGAGATACCCTTCAAGCCTGCCAGAGTACTGCTTCAGGATTTTACTGGCGTTCCTGCTGTAGTGGATCTTGCATGCATGCGTGATGCTATGAACAAACTTGGTGGTGATGCCAATAGAATTAATCCTTTGGTACCCGTGGATCTTGTTATTGATCACTCTGTCCAGGTTGATGTTGCAAGATCAGAAAATGCTGTTCAGGAAAACATGATATTTGAGTTCCAACGCAACAAAGAAAGATTTGCATTTTTGAAATGGGGATCACGTGCGTTTCACAATATGCTTGTGGTTCCACCAGGGTCTGGTATAGTCCACCAGGTGAATCTTGAATACCTTGCTCGTGTAGTTTTCAATGCTGGAGGGATTCTTTATCCGGACAGTGTAGTTGGTACAGATTCACACACAACTATGGTAGATGGATTAGGTGTTGCTGGTTGGGGAGTTGGTGGAATAGAAGCAGAAGCAGCAATGCTGGGTCAGCCGATGAGTATGGTTCTTCCTGGAGTTGTTGGATTTAAGTTATCAGGAAAACTGAGGAATGGCGTGACTGCTACTGACTTGGTTTTAACTGTGACACAAATACTACGGAAGCATGGTGTTGTTGGGAAATTTGTAGAATTCTATGGGGAAGGAATGGGGGAACTTTCACTAGCAGACCGGGCTACTATAGCTAACATGTCACCTGAGTATGGAGCAACCATGGGATTCTTTCCTGTGGATCGCGTTACCTTGCAATACCTGAAGCAGACTGGCAGAAGTGATGAAACTGTTGCGATGATAGAGGCATACTTGAGAGCCAATAAAATGTTCGTTGATTACACTCAGGCCCAGGTAGAAAGAGTGTATTCATCTTATTTGGAACTTAATCTGGAAGAAGTGGAGCCATGCGTATCTGGCCCAAAAAGGCCGCATGATAAAGTTCCCTTGAAGGAAATGAAAACAGATTGGCAGTCTTGCCTGGACAGCAAAGTGGGATTTAAGGGCTTTGCTATACCACATGAATCTCAGAAGAAAGTTGTAGATTTTACTTTCAAAGGGGAGCCAGCTCAGATAAAACATGGTGACGTTGTCATAGCAGCAATAACTAGTTGCACCAATACTTCAAATCCTAGTGTGATGCTTGGAGCTGCTTTGGTCGCAAAGAAAGCTTGTGATTTTGGTCTTGAGGTGAAACCGTGGATTAAAACGAGTCTTGCTCCAGGTTCTGGAGTGGTTACCAAGTACTTGGAAAAGAGCGGCTTACAGAAATACTTAAATCAACTTGGTTTCCACACTGTTGGATATGGTTGCACAACCTGCATAGGAAATTCTGGAGACATTGATGAAGCAGTTGCCTCTTCTATTACTCAGAATGATATGGTTGCTGCTGCTGTTTTGTCTGGAAATAGGAATTTTGAGGGGCGTGTACATCCTCATACTCGGGCTAACTATCTTGCTTCCCCTCCCCTTGTGGTCGCATATGCTCTTGCTGGCACGGTTGACATAGATTTTGACAAAGAGCCCATTGGTGTTTCCAAAGAAGGGAGAGATGTGTACTTCAAAGATATCTGGCCAACCAACGAAGAGATTGCCAACGTTGTCCAATCAAGCGTCCTTCCAGACATGTTCAAGGCTACCTACGAATCAATCACAACAAACAATCCCATGTGGAATCAGCTGCAGGTGCCAAGCTCCGGCCTCTACACGTGGGACCCATCGTCAACTTACATCCACGAGCCGCCCTACTTCACGAACATGACGATGACCCCTCCCGGCCCTCATTTCGTGAAGGATGCCTACTGCCTCCTGAGCTTCGGTGACAGCATCACGACAGACCACATTTCTCCCGCCGGTAGCATTCACAAGGACAGCCCTGCTGCCACATACTTGATCCAGCGCGGCGTTGACAGGAAGAATTTCAACTCGTATGGCAGCCGCCGTGGCAACGACGAGGTGATGGCCCGCGGGACGTTTGCCAACATTCGCCTCGTCAATAAGCTCCTGAACGGCGAGGTTGGGCCCAAAACAATCCACATACCCTCTGGGGAGAAATTGTCAGTGTTTGATGCTGCAATGAAATACAGAGCTGATGGGCATGACACAGTCATTCTAGCCGGCGCCGAGTATGGAAGTGGAAGCTCTCGCGATTGGGCTGCCAAGGGCCCTATGCTGCTGGGGGTGAAAGCGGTGATCGCAAAGAGCTTTGAGAGGATTCATCGCAGCAACTTGGTCGGAATGGGAATCATTCCCCTGTGCTTCAAGCCCGGTGAAGACGCCGACACCATCGGATTGACCGGCCGCGAGCGGTTCACCGTTCACCTCCCGACCGCCGTCACCGATATCAAGCCCAGCCAGGACGTGACTGTTACGTCCGACGACGGCAAGACATTCACCTGCACTGTTCGCTTTGACACCGAGGTTGAGTTGGAGTATTACAACCATGGTGGAATCCTGCCGTTCGTTATCCGAAGCCTCGTTGGCGCGAATCAGTAGATTCAATTTAATTAAATATTATATGATTCTCCTGTATTTTCTTCTTTTTTTTTTAATTTATATATGCGGCCGGGTAAAATAAATAGAAATACATGAGATCATTTTTCATTATATATATATATATATATA

Network for GWHGAAEX001293

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00330.19	Aconitase	138	641	7.70E-183
PF00694.18	Aconitase_C	770	897	1.00E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01681	ACO, acnA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Citrate cycle (TCA cycle)	map00020
		Glyoxylate and dicarboxylate metabolism	map00630
		Carbon fixation pathways in prokaryotes	map00720

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	52.260
SRP064423	SRR2545915	Juvenile tuber	79.080
SRP108465	SRR5643513	five period of Gastrodia elata	146.780
	SRR5643514	five period of Gastrodia elata	174.630
	SRR5643515	five period of Gastrodia elata	172.550
	SRR5643524	five period of Gastrodia elata	187.260
	SRR5643525	five period of Gastrodia elata	123.160
	SRR5643528	five period of Gastrodia elata	168.890
	SRR5643658	five period of Gastrodia elata	93.050
	SRR5643659	five period of Gastrodia elata	104.250
	SRR5643660	five period of Gastrodia elata	113.590
	SRR5643661	five period of Gastrodia elata	104.950
	SRR5643662	five period of Gastrodia elata	89.000
	SRR5643663	five period of Gastrodia elata	101.990
	SRR5643664	five period of Gastrodia elata	73.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	152.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	193.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	169.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	118.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	140.230
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	132.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	121.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	129.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	212.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	172.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	243.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	243.330
SRP279888	Gastro	Gastrodia elata tuber	137.68
	Juven	Juvenile tuber	200.86
	Mother_Gastro	Mother tuber of Gastrodia elata	228.25
	Mother_Juven	Mother tuber of Juvenile	423.88