Gene detail

Detail information of GWHGAAEX001296/evm.TU.scaffold_108.72

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743854594\|ref\|XP_010940961.1\|	PREDICTED: protein HAPLESS 2 [Elaeis guineensis]
Swissprot	tr\|F4JP36\|HAP2_ARATH	Protein HAPLESS 2 (Precursor)
trEMBL	tr\|G7KDG2\|G7KDG2_MEDTR	Hapless protein {ECO:0000313\|EMBL:AES94097.1}
TAIR	AT4G11720	hapless 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	2116375	2131852	+

Transcript Sequence
>GWHTAAEX001296 ATGGCGAAAGCGCCTCTTCCGAAACCGGCTCCAACAGTCCTTTTCATCTTTCTGCACCTCCTCAGACTTCATCACTCATTGGCTATGGAGATACTCTCCAAATCGAAGCTGGAACGTTGCACCCATATCTCAGGCTCCGACAACTTGAACTGCGCAAAGAAAGTTGTCATCAATATGGTTGTCCCAAGCGGTTCTAGCGGCGGCGAGGCTTCTATAGTTGCGGAGCTTGTGGAGGTGGAGGAAAATGATACACAGAAAATGCAGACAGTACGAGTGCCACCCATTATTACAATCAACAAGTCTGCGGCTTATGCGCTTTATGATTTGTCATACCTAAGGTTTTTCATATTTCTTCAAGATGTTGCATATAAACCAGAGGAGTTTTACGTCAAAACTCGTAAATGTGAGCCTGATGCAAGTTCAAGAGTCGTTAAAATTTGTGAAAGGTTGCGGGATCAAGATGGTCACACAATTGAGCACACACAGCCAATTTGCTGTCCTTGTGGGCCAAGACGTCGTGTTCCTTCATCTTGTGGGAACATTTTTGATAAACTGCTGAAAGGGAAGGCAAACACTGCACACTGTCTTCGATTTCCAGGTGAACGGTTTCATGTTTTTGGCATTGGAAAGAGATCTATTGGATTTAGTATCCAGATTGAAGTTAAAAAAGGTTCTTCAGTATCTGAGGTAGTAATGGGTCCTGAAAATAGAACAGTATTATCAAAAGATAACTTTTTAAGAGTTAATCTTGTTGGTGATTTTGTTGGCTATACAAGTATTCCTTCTTTTGAGGACTTCTATCTTGTTACACCAAGATTAGGTGCTGCAGGGCATCCAGAAAATCTAGGGACAAACTTCTCGAAGTGGATGCTACTAGAGAGAGTGCGTTTTACGTTAGATGGTCTTGAATGCAACAAAATTGGTGTTGGTTATGAAGCATACAGAAGCCAACCAAATTTTTGTTCATCACCACTATGGAGCTGCTTGCATAATCAACTGTGGCATTTTTGGGAAGCTGATATGAATCGGATAAGCAGGAATCAAGCTCCACAGTATGTGATTGATGGAAGATTTGAAAGGATAAATCAACATCCAAGTGCAGGGACACATTCATTTTCTGTGGGAATATCTGAAGTCCTTAATACAAATTTATTAATAGAGTTGAGTGCAGATGATATCGAGTATGTATATCAAAGGAGTCCAGGGAAGATTTTAAGCATAAGTGTACCTACTTTTGAAACACTTACCCAATTTGGTACGGCCATAGTGACAACAAAGAACATTGGTGAACTAGAAGCATCATATAGCCTAACATTTGATTGCTTGAAGGGTGTCAGCTACATGGAGGAACAATTTTATATAATGAAGGCAGGCGAGGTTGTCTCTCGTTCATTCCACATATACCCCTCGACAGATCAGGCCGGAAAGTACGATTGTGCAGCAATTCTCAAGGCTTCTGATTTCGCTGAAATAGATCGTGCAAGCTGTCAATTTAGTACCAAGGCAACAGTTCTTGACAATGGATCTCAGATAATGTATGAATATAGTTCAAAAAGTGGAGGTTTGAATGGGTTTTTAGAATCAATTAAAAGTGGATGGAAAAGAATCTGGGGAGGCTTGGTAGATTTTTTTACAGGGAAAACATGCAGCAGAAGCAAATGCTCAAGCTTCCTAGATTTCAGTTGCCACACGCAGTATGTTTGCATCAGCTGGATACTGATGTGCGGATTGGTGCTGGCCTTATTCCCTACTGGCATCATTCTTCTGTGGCTTCTGCATCAAAAAGGGTTTTTTGATCCCCTTCATGATTGGTGGGATGACTGGTTTGGTAGCGAGGGTAGAAGGAATGATATCCCTGCAATGAGACGGTCACACATCCATCATCAGAAAGGCCATCATCATCATCAAAAGCATCATATTCATATCAGTAAGGAAAGGAGGTATAAAAAGAAGCAGAGCTCTCATGATCGCCTGCATGCTAGGCATGATGGCCATTCCCTCCATGTTCATAAAGAGATCCACAAGCGCAGGCATAAGCACGAGCCTCTATTGAGAGGGGAGGCGAACGAACACACTGGTGTTCCCAAGCACCACGAGGAGAAGCAAGTTTCTCGAAAGCACGGCCATGGCCACACTCATAGACAAGAAATCTATTCTGAGCCATTTGAACGAGATCATTGGTGA

Network for GWHGAAEX001296

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10699.8	HAP2-GCS1	290	337	2.50E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.770
SRP064423	SRR2545915	Juvenile tuber	2.940
SRP108465	SRR5643513	five period of Gastrodia elata	2.070
	SRR5643514	five period of Gastrodia elata	2.210
	SRR5643515	five period of Gastrodia elata	2.260
	SRR5643524	five period of Gastrodia elata	2.190
	SRR5643525	five period of Gastrodia elata	1.200
	SRR5643528	five period of Gastrodia elata	2.770
	SRR5643658	five period of Gastrodia elata	2.490
	SRR5643659	five period of Gastrodia elata	1.750
	SRR5643660	five period of Gastrodia elata	2.540
	SRR5643661	five period of Gastrodia elata	2.140
	SRR5643662	five period of Gastrodia elata	2.000
	SRR5643663	five period of Gastrodia elata	2.770
	SRR5643664	five period of Gastrodia elata	2.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.880
SRP279888	Gastro	Gastrodia elata tuber	2.07
	Juven	Juvenile tuber	1.99
	Mother_Gastro	Mother tuber of Gastrodia elata	3.45
	Mother_Juven	Mother tuber of Juvenile	3.70