Detail information of GWHGAAEX001303/evm.TU.scaffold_108.80


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|719971610|ref|XP_010275193.1|1.36E-61PREDICTED: ensconsin isoform X1 [Nelumbo nucifera]
trEMBLtr|A0A067KIA2|A0A067KIA2_JATCU3.00E-55Uncharacterized protein {ECO:0000313|EMBL:KDP35837.1}
TAIRAT5G492109.00E-26Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011721971382206654+
Transcript Sequence

Network for GWHGAAEX001303

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14943.5MRP-S26561941.00E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005763Cellular Componentmitochondrial small ribosomal subunit

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms74.340
SRR2545915Juvenile tuber64.900
SRP108465SRR5643513five period of Gastrodia elata60.320
SRR5643514five period of Gastrodia elata58.690
SRR5643515five period of Gastrodia elata58.190
SRR5643524five period of Gastrodia elata55.540
SRR5643525five period of Gastrodia elata81.150
SRR5643528five period of Gastrodia elata94.750
SRR5643658five period of Gastrodia elata81.980
SRR5643659five period of Gastrodia elata53.170
SRR5643660five period of Gastrodia elata62.300
SRR5643661five period of Gastrodia elata61.260
SRR5643662five period of Gastrodia elata53.760
SRR5643663five period of Gastrodia elata50.980
SRR5643664five period of Gastrodia elata51.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_154.930
SRR6049655Rhizomagastrodiae_C368-T10_good_136.490
SRR6049656Rhizomagastrodiae_C368-T07_good_166.520
SRR6049657Rhizomagastrodiae_C368-T07_good_154.310
SRR6049658Rhizomagastrodiae_C368-T04_good_155.050
SRR6049659Rhizomagastrodiae_C368-T04_good_153.660
SRR6049660Rhizomagastrodiae_C368-T01_good_160.960
SRR6049661Rhizomagastrodiae_C368-T04_good_158.580
SRR6049662Rhizomagastrodiae_C368-T01_good_162.690
SRR6049663Rhizomagastrodiae_C368-T01_good_161.530
SRR6049664Rhizomagastrodiae_C368-T10_good_167.600
SRR6049665Rhizomagastrodiae_C368-T10_good_167.600
SRP279888GastroGastrodia elata tuber 73.52
JuvenJuvenile tuber69.09
Mother_GastroMother tuber of Gastrodia elata 96.26
Mother_JuvenMother tuber of Juvenile 75.91