Detail information of GWHGAAEX001304/evm.TU.scaffold_108.81
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256390603|ref|YP_003112167.1| | 3.00E-20 | serine/threonine protein kinase [Catenulispora acidiphila DSM 44928] |
| KOG | KOG0594 | 3.00E-177 | Protein kinase PCTAIRE and related kinases |
| nr | gi|695008154|ref|XP_009390657.1| | 0 | PREDICTED: cyclin-dependent kinase B2-1-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q0J4I1|CKB21_ORYSJ | 2.00E-178 | Cyclin-dependent kinase B2-1 |
| trEMBL | tr|M0SBI8|M0SBI8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P03700_001} |
| TAIR | AT1G20930 | 3.00E-177 | cyclin-dependent kinase B2;2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000117 | 2207980 | 2211273 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001304
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 19 | 309 | 2.10E-67 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CMGC_CDK-Pl |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.530 |
| SRR2545915 | Juvenile tuber | 21.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.250 |
| SRR5643514 | five period of Gastrodia elata | 20.130 | |
| SRR5643515 | five period of Gastrodia elata | 20.580 | |
| SRR5643524 | five period of Gastrodia elata | 22.130 | |
| SRR5643525 | five period of Gastrodia elata | 14.510 | |
| SRR5643528 | five period of Gastrodia elata | 6.660 | |
| SRR5643658 | five period of Gastrodia elata | 11.130 | |
| SRR5643659 | five period of Gastrodia elata | 14.950 | |
| SRR5643660 | five period of Gastrodia elata | 18.390 | |
| SRR5643661 | five period of Gastrodia elata | 16.820 | |
| SRR5643662 | five period of Gastrodia elata | 18.570 | |
| SRR5643663 | five period of Gastrodia elata | 17.590 | |
| SRR5643664 | five period of Gastrodia elata | 21.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 42.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.66 |
| Juven | Juvenile tuber | 9.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.38 | |
| Mother_Juven | Mother tuber of Juvenile | 6.02 |