Detail information of GWHGAAEX001306/evm.TU.scaffold_108.83


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|538394403|ref|YP_008515976.1|4.00E-23putative glyoxylate reductase [Variovorax paradoxus B4]
KOGKOG30630Membrane coat complex Retromer, subunit VPS26
nrgi|672127127|ref|XP_008787026.1|0PREDICTED: vacuolar protein sorting-associated protein 26B isoform X1 [Phoenix dactylifera]
Swissprottr|Q9T091|VP26B_ARATH0Vacuolar protein sorting-associated protein 26B
trEMBLtr|B9T2W4|B9T2W4_RICCO0Vacuolar protein sorting 26, vps26, putative {ECO:0000313|EMBL:EEF29800.1}
TAIRAT5G535300vacuolar protein sorting 26A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011722406062289006+
Transcript Sequence

Network for GWHGAAEX001306

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00389.292-Hacid_dh271942.30E-18
PF03643.14Vps261744495.50E-122
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18466VPS26 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0006886Biological Processintracellular protein transport
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287Molecular FunctionNAD binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms40.860
SRR2545915Juvenile tuber37.030
SRP108465SRR5643513five period of Gastrodia elata29.820
SRR5643514five period of Gastrodia elata32.100
SRR5643515five period of Gastrodia elata29.850
SRR5643524five period of Gastrodia elata34.750
SRR5643525five period of Gastrodia elata30.620
SRR5643528five period of Gastrodia elata41.440
SRR5643658five period of Gastrodia elata40.600
SRR5643659five period of Gastrodia elata23.890
SRR5643660five period of Gastrodia elata21.430
SRR5643661five period of Gastrodia elata21.650
SRR5643662five period of Gastrodia elata21.370
SRR5643663five period of Gastrodia elata21.910
SRR5643664five period of Gastrodia elata20.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.410
SRR6049655Rhizomagastrodiae_C368-T10_good_132.710
SRR6049656Rhizomagastrodiae_C368-T07_good_131.780
SRR6049657Rhizomagastrodiae_C368-T07_good_127.140
SRR6049658Rhizomagastrodiae_C368-T04_good_126.900
SRR6049659Rhizomagastrodiae_C368-T04_good_129.200
SRR6049660Rhizomagastrodiae_C368-T01_good_125.440
SRR6049661Rhizomagastrodiae_C368-T04_good_127.220
SRR6049662Rhizomagastrodiae_C368-T01_good_132.720
SRR6049663Rhizomagastrodiae_C368-T01_good_128.890
SRR6049664Rhizomagastrodiae_C368-T10_good_140.080
SRR6049665Rhizomagastrodiae_C368-T10_good_140.080
SRP279888GastroGastrodia elata tuber 27.69
JuvenJuvenile tuber21.96
Mother_GastroMother tuber of Gastrodia elata 31.37
Mother_JuvenMother tuber of Juvenile 25.04