Detail information of GWHGAAEX001309/evm.TU.scaffold_108.86
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-58 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743879508|ref|XP_010908418.1| | 0 | PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Elaeis guineensis] |
| Swissprot | tr|P93194|RPK1_IPONI | 0 | Receptor-like protein kinase (Precursor) |
| trEMBL | tr|M0XPW2|M0XPW2_HORVD | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_61989.1} |
| TAIR | AT1G73080 | 0 | PEP1 receptor 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000117 | 2297739 | 2302078 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001309
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.5 | LRR_8 | 174 | 231 | 2.00E-06 |
| PF13855.5 | LRR_8 | 534 | 594 | 1.30E-06 |
| PF00560.32 | LRR_1 | 656 | 676 | 0.4 |
| PF00069.24 | Pkinase | 807 | 1075 | 6.40E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.020 |
| SRR2545915 | Juvenile tuber | 3.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.290 |
| SRR5643514 | five period of Gastrodia elata | 5.580 | |
| SRR5643515 | five period of Gastrodia elata | 5.130 | |
| SRR5643524 | five period of Gastrodia elata | 4.790 | |
| SRR5643525 | five period of Gastrodia elata | 2.770 | |
| SRR5643528 | five period of Gastrodia elata | 2.000 | |
| SRR5643658 | five period of Gastrodia elata | 2.740 | |
| SRR5643659 | five period of Gastrodia elata | 5.010 | |
| SRR5643660 | five period of Gastrodia elata | 3.800 | |
| SRR5643661 | five period of Gastrodia elata | 4.070 | |
| SRR5643662 | five period of Gastrodia elata | 2.660 | |
| SRR5643663 | five period of Gastrodia elata | 3.660 | |
| SRR5643664 | five period of Gastrodia elata | 2.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.660 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.10 |
| Juven | Juvenile tuber | 5.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.98 | |
| Mother_Juven | Mother tuber of Juvenile | 2.81 |