Gene detail

Detail information of GWHGAAEX001310/evm.TU.scaffold_108.87

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743775327\|ref\|XP_010918042.1\|	1.96E-162	PREDICTED: probable calcium-binding mitochondrial carrier F17E5.2 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0WI42\|M0WI42_HORVD	1.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:MLOC_51720.1}
TAIR	AT4G15010	5.00E-80	Mitochondrial substrate carrier family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	2309699	2350269	-

Transcript Sequence
>GWHTAAEX001310 AAAGAAACAAAGAATGTCCCAAACTAAGATTCACTTGCTGCTAGTAACCTAACACAGGCTCGATTATTATTAGAATAGAACTCCAAAACCATGGGTTCAGAAGCGAACAGCAGCCGCACACCCTTCTCCAACAATTTTTGTGCGAACCTCGGAACCCGCCCACTTTGTTCCAGTTGAGCGACGAGCAATGAGAGGACCCTTCGAGGATAACTTCATGAGCGGGCATGCTGCCGCCGCCTCAGCCGCATTCTTTCTTTCCTCTTCTCTTACCCATCCCCTTGACACATTGAAAACCCTCGTCCAGGTCAGTGCAGGGCCTAAACAACAATTGAGCATTCCTCAGGTGCTGGATAGAGTGAAATCGGTTTCTGGGATTTCAGGCTTTTATAATGGATTGGGTTGGTCAACAATGGCTAAGATTTCAGGAATTGGCACTCGTTTTGGTGTTTTTCAAATATTGTCAGCTTTTTATACAGATGGAAGGGAAGACACCTATGTGTATGTTTCAGAGGCTACATTGGCTGGCATAGCGGCAGGTGCCGTGGAGGCTGTTGTTAACACTCCTTTTGAACTTTTGAAAAACAGGGAACAAACAGGATCTACATCAAAATCTGGCATTTCAAAGGCTATCAAGTCGATGCAAGACTCCAATTCTATCATTTCAAAACTGCTTCCAAAACATGGTTCTCATGTGAAGGCATGGGGCCATACTATTGGTCTTTTATCATCCCTGCCTGCAAAGCATTCTAACCTGGATTTTGCATTGAAGCAATATCCATGGATGCTGACAGGTTCTGGTAGGCCACCGCTCGCATCCTTTGTCAAAGGACCTTTAGACATTATTTCTTTGGAAGGTTGGAGTGCTTTGTGGAGAGGACTTCGAACTGGCATTGCTAGGGACTGTGTTTACGGTGGCTTTTTTTTTGCAACATGGCAATTTTTGCACGTTGGAATGCTGACATGGAAGGCTCTTAATACTGTACCATCACCTAGGTCAATCAATGAGATTGGTCCAGTCTCGCCTTTGGCTTCTAGTCTTGCTGCGGGATTTTCTGGAGTAGTAGCTGCTGCAGCTTCTCATCCTTTTGACACAGCTAAAACTCGATTACAGTGTGTTGCTATGCCTAAGTACATTAAGATGGAAAGGAAGTTCTTAAAATGGGAAGCTGCTGGAGTTTGGTTAGAGAGAGTCACTGACATGTCCCCTGCAGATCGAAAATTCTTGTTTCGTGGTTTTGGATTGCGAATGGCCTGCAGCGGTGTTGCATCATTCACCCTTGTCTCAAGCTACTTATTTGGCATTAAACATCTATTATAATTGTTGTTTGGTTGGTTCTGATATGGATTCGTTGACTTCATCAGTAATCTTGAAGATTGTTTCTGAGGAGGAGATGGCGGAGCTTATAAGTGATTAGCTTTGGATTGCAGATATTGATGCGTTGAGATGGCATAAAGAGATGATTACGTCAAAAAACTTGAGACGACTACCAGACATGATTCCTTATAGTAAGCTTTCATAGGTGTAACTTTCATGGTCTTCACAGAGAGCTTCCTCAGCTTCTTATTACATGAGATATCTGCTCGTATGTAGCCAGCAGCACATTTTTGGCCTCCTCAATTGTAAGAACAACTTCAAGTTCTCAACATTTACAATCAAGTATATCTATATTTACATCGATAATTCAAGTTAATAGACAATAATGTTCATCATCTTCTTGGCAATATTTAATTGGCTTGAGAACTTTCTTCTTAATTCAGTGTGATGATCTGAGTATTATATTGAAAATTTTGATAATTTGTAATATTTCTAAGTTTTTTATTCATCAAGATTTATTTGTATTTGTACAAAAGAATCGCAATGAATAGTATTAGTTCAATAGTTACGGTCTTGAATTTTAACTCTTGAAATGTCCAGAATTCAAATCATCCCGGCCACATAATTTCTTCATTTAGCC

Network for GWHGAAEX001310

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00153.26	Mito_carr	11	96	8.60E-10
PF00153.26	Mito_carr	277	368	2.50E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.110
SRP064423	SRR2545915	Juvenile tuber	6.100
SRP108465	SRR5643513	five period of Gastrodia elata	5.330
	SRR5643514	five period of Gastrodia elata	4.430
	SRR5643515	five period of Gastrodia elata	5.460
	SRR5643524	five period of Gastrodia elata	5.540
	SRR5643525	five period of Gastrodia elata	5.310
	SRR5643528	five period of Gastrodia elata	6.190
	SRR5643658	five period of Gastrodia elata	4.080
	SRR5643659	five period of Gastrodia elata	7.840
	SRR5643660	five period of Gastrodia elata	8.170
	SRR5643661	five period of Gastrodia elata	7.190
	SRR5643662	five period of Gastrodia elata	7.220
	SRR5643663	five period of Gastrodia elata	6.970
	SRR5643664	five period of Gastrodia elata	6.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.210
SRP279888	Gastro	Gastrodia elata tuber	7.39
	Juven	Juvenile tuber	8.55
	Mother_Gastro	Mother tuber of Gastrodia elata	6.01
	Mother_Juven	Mother tuber of Juvenile	7.79