Gene detail

Detail information of GWHGAAEX001312/evm.TU.scaffold_108.89

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434404035\|ref\|YP_007146920.1\|	3.00E-08	WD40 repeat-containing protein [Cylindrospermum stagnale PCC 7417]
KOG	KOG1273	0	WD40 repeat protein
nr	gi\|743837996\|ref\|XP_010936566.1\|	0	PREDICTED: LOW QUALITY PROTEIN: retinoblastoma-binding protein 5 homolog [Elaeis guineensis]
trEMBL	tr\|M0SJ35\|M0SJ35_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P30190_001}
TAIR	AT3G21060	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	2390838	2404177	-

Transcript Sequence
>GWHTAAEX001312 GTTTAAACATGTCGAGTTAATGGCGTTCAGCTATTATATTGTAGATGATAGGGTTGAAAAGAAGTAGGTTCGAAGTGGACAGAATCGAAATAATCGGCTTCGGCGGGCGTTGGATTGAGGAAATCGCAACGTTATTAAGGCAAAAACTACTGGCTTGATTTGAACATGGGGCTTAATCGGAATCGGCAGCCGAAAGTGGCTCGATTTGCTTCTTGTTTATAATTTCTGCCGTCTGCTCTCCAGCTCACCCTTTCCTCTTGCAAGCGATTTTAAAATTTCCTATTCGCGCCTCTTTGTTGCGGCGGCAATCGTCGCTTGCGGCTTTCGTGCATCCCGCTCTTATCGTTCCTCTTATCTGGAGTGAAATTTCGGGCACCAAGGCTTTCGGACGCTGAGAAAAGGCTTTTCCCGAAAGTTCGTCCAACAGTTTTGATGTAATGAATGTTACGATCATAGATCCGTTGCAGGGAGATTTCCCAGAAGTGATAGAGGAGTACTTGCAGCATGGGAACATGAAGTGCATTGCTTTTAATCGCCGCGGAACTCTTCTAGCCGCGGGTTGTTCCGATGGAAGCTGCGTCATTTGGGATTTTGAAACTCGGGGAGTTGCAAAGGAGCTACGTGATAAAGACTGCATTGCTCCCATAACAAGCGTCTGCTGGTCAAAATATGGCCACCACCTGCTTGCTTCAGCTACTGATAGATCCTTAACTCTCTGGGCAGTCAAGTCTGGCGAGAAGCTATCCCGAGTAACTCTGCAACAAACAACACTTCTTGTTCGTCTTCATCCGGGATCCTGCACTCCATCAACCTGCTTGGCCTGTCCTCTCTCCTCTGCTCCAATCCTTGTAGATCTGAACACTAGCAGCTCTACCGTTCTTCCAGTTTCAGTTTCAGATGCTGGAATAGGTGCCCTTTCCCATCCGCGCAATAAGTTTGCTGATGGCTCCCCGCCTTACACTCCCACAGCTGCCACTTTCAACAAACACGGCGACCTAATCTATGTTGGAAACTCCAAAGGCGAGATACTCATAGTGGATTACAAAACGATCCGCGTTCGTGCTATGATCCCCATTTCAGGGGGCTCTATAGTTAGAAACGTAGTTTTTAGTAGGAATGGCCAATATTTGCTCACGAACTCTAACGACCGCATCATCAGAATCTATGAGAATCTGCTTACGCAGCGAAATGCAGCTGGAGCTCTTGAGGAAATAGGCGGATCATTAGATGAACTTCAAGGGACGGCCGAGAAGCTGAAGGCTGTCGGATCCAAATGTCTGATCTTGCAGAGGGAGTTCCAGGACGCAGTTACGAAGATCCAGTGGAAAGCTCCCTGCTTTAGTGGTGACGGTGAGTGGTTGGTCGGCGCCTCTGCCACCAAAGGGGAGCACAAAATATACATATGGGATAGGTCGGGGTACCTGGCAAAGATACTTGAAGGTCCCAAAGAGGCTTTGATTGATCTTGCTTGGCACCCAGTCCGACCACTGGTTGTTTCGGTTTCCATTGCTGGGTTAGCGTACATATGGGCCAAAGATTACACCGAGAACTGGAGCGCCTTTGCGCCCGATTTCAAAGAACTTGAGGAGAACGAAGAGTACGTGGAGAGAGAAGATGAGTTTGATTTGGTGCCCGAAACCGATAAAGTGAGAGAGTGCAAAGTCGACGAAAACGAAGAAGTAGATATTGTGACCCTTGAGAAGGATTCACCGTTCAGTGATTCTGATGCATCCTTGGAAGAGCTATGCTTCCTCACTGCAGTTCCTTCCCCGGACATTACGGAGCAGCAGGAGAAGTATGTGGGAAGCTCTACCAAGGTCGAGGAGAGCATTCATTCAGGCTCTCCGGTTTCCGTCGATGCCGAGCAGAATGGCCGGGCAATAATACCCCCTGCTCTGAGCCCCACTGAAGTGGGTGTAAACTCTGCAGCAGAAGAATCCTTGGGGACTAATAGTAATAATAGCTCAAAGAGGAGGAGAAAGCCTTCGGCAAAAGGGCTTGAATTACAGGCAGATCAGTGCAGGAAACCATTAAAGAAGGGCAAATCATCAAGCCAGCCCTTGAAGCCTAAAAATAAAAAGAATGATCAGAATACAAATGGATCCGTACTTGAGGATGATGTAACTTATGACTGCTTGTAATAAAATGCATTCAAATCTTTTAATGGTAATTTAATATCATATTTCTTCCTGCATTCAAAAAAGAGTTGGAAGCTTAGCACAGTAAATCCATGAGAATTGCAATGATATTTGATAGTGTTATGAATGCTGTCATTATAATAGAAAATTAGCCAACCATATCAGGAAGAAGAAGATATTTGCAGAGGTAATGATGGCTCTCTCATGCCCAATGCTTCAACCTCAAGGAGATTGATGTTTTTTGTGACAACTTCATTTCTTTATATCGAAACCAACGCAGTCCTATGCTGAATAAATGTGTAAAGAGCTAGAAAATTTTATAGATATGATGTGTGGTTTACTAGTCATATTCTTGGGACTATAAATGTAAGTTTTTTGTAATTTTATGCAGTGCATTTTCGAAGCACTATTAATGTGTACTGTTTTAATAAGCATACAGACAGG

Network for GWHGAAEX001312

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	22	51	0.00083
PF00400.31	WD40	69	94	0.051

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.540
SRP064423	SRR2545915	Juvenile tuber	17.330
SRP108465	SRR5643513	five period of Gastrodia elata	14.570
	SRR5643514	five period of Gastrodia elata	15.860
	SRR5643515	five period of Gastrodia elata	14.030
	SRR5643524	five period of Gastrodia elata	15.470
	SRR5643525	five period of Gastrodia elata	17.850
	SRR5643528	five period of Gastrodia elata	19.650
	SRR5643658	five period of Gastrodia elata	21.050
	SRR5643659	five period of Gastrodia elata	15.320
	SRR5643660	five period of Gastrodia elata	15.750
	SRR5643661	five period of Gastrodia elata	14.420
	SRR5643662	five period of Gastrodia elata	17.070
	SRR5643663	five period of Gastrodia elata	15.600
	SRR5643664	five period of Gastrodia elata	16.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.380
SRP279888	Gastro	Gastrodia elata tuber	19.15
	Juven	Juvenile tuber	19.48
	Mother_Gastro	Mother tuber of Gastrodia elata	17.57
	Mother_Juven	Mother tuber of Juvenile	14.07