Detail information of GWHGAAEX001313/evm.TU.scaffold_108.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1716 | 0 | Dual specificity phosphatase |
| nr | gi|242052775|ref|XP_002455533.1| | 0 | hypothetical protein SORBIDRAFT_03g012770 [Sorghum bicolor] |
| Swissprot | tr|Q75QN6|DPHS1_ARATH | 0 | Dual specificity protein phosphatase PHS1 |
| trEMBL | tr|C5XIS9|C5XIS9_SORBI | 0 | Putative uncharacterized protein Sb03g012770 {ECO:0000313|EMBL:EES00653.1} |
| TAIR | AT5G23720 | 0 | dual specificity protein phosphatase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000117 | 2408248 | 2420765 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001313
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF09192.9 | Act-Frag_cataly | 97 | 321 | 2.00E-39 |
| PF00782.19 | DSPc | 638 | 766 | 2.50E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016311 | Biological Process | dephosphorylation |
| GO:0006470 | Biological Process | protein dephosphorylation |
| GO:0016791 | Molecular Function | phosphatase activity |
| GO:0008138 | Molecular Function | protein tyrosine/serine/threonine phosphatase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.680 |
| SRR2545915 | Juvenile tuber | 14.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.120 |
| SRR5643514 | five period of Gastrodia elata | 12.270 | |
| SRR5643515 | five period of Gastrodia elata | 13.060 | |
| SRR5643524 | five period of Gastrodia elata | 14.420 | |
| SRR5643525 | five period of Gastrodia elata | 14.070 | |
| SRR5643528 | five period of Gastrodia elata | 16.390 | |
| SRR5643658 | five period of Gastrodia elata | 13.360 | |
| SRR5643659 | five period of Gastrodia elata | 13.400 | |
| SRR5643660 | five period of Gastrodia elata | 12.420 | |
| SRR5643661 | five period of Gastrodia elata | 10.180 | |
| SRR5643662 | five period of Gastrodia elata | 11.070 | |
| SRR5643663 | five period of Gastrodia elata | 13.610 | |
| SRR5643664 | five period of Gastrodia elata | 10.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.550 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.30 |
| Juven | Juvenile tuber | 19.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.05 | |
| Mother_Juven | Mother tuber of Juvenile | 30.12 |