Detail information of GWHGAAEX001315/evm.TU.scaffold_108.94


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189502738|ref|YP_001958455.1|6.00E-19hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
KOGKOG05042.00E-43FOG: Ankyrin repeat
nrgi|672123409|ref|XP_008785067.1|6.41E-155PREDICTED: ankyrin repeat domain-containing protein, chloroplastic isoform X1 [Phoenix dactylifera]
Swissprottr|Q05753|AKRP_ARATH2.00E-120Ankyrin repeat domain-containing protein, chloroplastic (Precursor)
trEMBLtr|M0ST73|M0ST73_MUSAM8.00E-133Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P29610_001}
TAIRAT5G401602.00E-43Ankyrin repeat family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011725053272539151+
Transcript Sequence

Network for GWHGAAEX001315

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13637.5Ank_43063484.80E-07
PF12796.6Ank_23684322.30E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.880
SRR2545915Juvenile tuber17.580
SRP108465SRR5643513five period of Gastrodia elata10.340
SRR5643514five period of Gastrodia elata11.630
SRR5643515five period of Gastrodia elata12.290
SRR5643524five period of Gastrodia elata11.240
SRR5643525five period of Gastrodia elata16.600
SRR5643528five period of Gastrodia elata17.310
SRR5643658five period of Gastrodia elata17.520
SRR5643659five period of Gastrodia elata12.900
SRR5643660five period of Gastrodia elata12.990
SRR5643661five period of Gastrodia elata13.720
SRR5643662five period of Gastrodia elata15.260
SRR5643663five period of Gastrodia elata15.390
SRR5643664five period of Gastrodia elata14.630
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.770
SRR6049655Rhizomagastrodiae_C368-T10_good_113.940
SRR6049656Rhizomagastrodiae_C368-T07_good_112.850
SRR6049657Rhizomagastrodiae_C368-T07_good_113.300
SRR6049658Rhizomagastrodiae_C368-T04_good_113.990
SRR6049659Rhizomagastrodiae_C368-T04_good_117.930
SRR6049660Rhizomagastrodiae_C368-T01_good_112.700
SRR6049661Rhizomagastrodiae_C368-T04_good_115.100
SRR6049662Rhizomagastrodiae_C368-T01_good_112.940
SRR6049663Rhizomagastrodiae_C368-T01_good_113.860
SRR6049664Rhizomagastrodiae_C368-T10_good_112.270
SRR6049665Rhizomagastrodiae_C368-T10_good_112.270
SRP279888GastroGastrodia elata tuber 17.72
JuvenJuvenile tuber21.83
Mother_GastroMother tuber of Gastrodia elata 23.71
Mother_JuvenMother tuber of Juvenile 29.68