Gene detail

Detail information of GWHGAAEX001316/evm.TU.scaffold_108.95

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|46447096\|ref\|YP_008461.1\|	2.00E-10	hypothetical protein pc1462 [Candidatus Protochlamydia amoebophila UWE25]
KOG	KOG1947	0	Leucine rich repeat proteins, some proteins contain F-box
nr	gi\|672194540\|ref\|XP_008776320.1\|	0	PREDICTED: F-box/LRR-repeat protein 10 [Phoenix dactylifera]
Swissprot	tr\|Q9SDA8\|FBL10_ARATH	0	F-box/LRR-repeat protein 10
trEMBL	tr\|M0SXJ6\|M0SXJ6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P11170_001}
TAIR	AT2G17020	0	F-box/RNI-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	2544397	2556412	+

Transcript Sequence
>GWHTAAEX001316 GATCAATATAGCACCCTCAACCCTTCTGGTTGTTATTTGTATTAAGCTCAATTGCCTTAAAAGGTACTTTCATCCTTGGATTCAAAACTACGACTATGGTTGCAGGAGAAGAGTCGAATGCCGATGCGTCGGTTTCCTGCAGCGGCAGAGGAGGACGAGAAGAAAACTTAAGGTCGGATCCATCGTTTGGGATGGAACAGTGCCTCCCTTCCACCATCATAGCAACGATTCTATCCAAGCTCGATATCCGCTCTCTCTGCGCGGCCTCCGCCTCCTGTCGATCTTTCCGTTTCTGCGCCGCCCACACTCTCTCCTTCATCTCTTCTTTTCATCTACTCGATATCGCACCAACGCTGGATCTTCTAAGGCCGCTACTGCCTCCTAACCCTTATCTGCGTAGCCTGAAGCTGGACTGCAGTCGCCTCGACGATTCTTCGATCGGGCATTTGGCGCGAGATTCGCTCCACGAGCTGTGCCTCCGTAGCTGTGAGAACTTGAGCGGCAGGCTTCTCGTTGAGTTGGGCCGCAAGTGTCCGGATCTCAGATCTGTCTATCTGGGCTCCCTTGCTGAGCGACGAAGGGTCGTAGTTCATTATTCTGAATTAAAAGAGTTACTCGCTGGATGCTCATATTTAGAGTCTTTGAGCTTGTTGTTTGATGTTGCGGAATTTGACCACCCTAATTTTGCTCAAATCTGGGCTGCTGCTTCAGTTAAACTCACATCCCTAGAGATTGGTTATATTCCCATGTCAATGCTGACTTCCTTACTCATCTTAGCTGTGGAAACCCGGAAGAAGCCTGCATGTACTGTAAAGCCTCCAGTATTCCCAAACCTGCAGAAGCTGTGCCTGTCAGTTGATTATATTTCTGATGACTTGATGAGCTCCCTTTCAGTAGGGCTTCCATACTTGACTCACTTGGATCTTCAAGACACACCGATTGTAGAACCAATACGATCCTCTGACCTCACCAATTCTGGTCTTCAACATATCAACAAGTACGGCATACTGAAACATATATCGCTTGTCCGAAGCCAGGAATATATGTTTACCTACTTTCGTCGGGTGAATGATTTAGGCATCCTCCTGATGTCAGATACATGCGCTTCACTTGAAAGCATCAGCCTTGGTGGGTTTTGCCGCGTCACTGATACTGGTTTTAGGGCTATCATACATGCGTGCTCCAACCTTTGCAAACTTGTGGTCTCTTACGGAAGCCAACTGACTGACCTCGTCTTCCACGACATATCTGCGACTTCCTTATCATTGACGCACGCTAGCTTGCGGTCGTGCAATCTCTTAACTGGCATCGGAATTACGAGGCTATCGCTAAATGCAGATCTGGCTGTTATAGACCTGAGAGATTGTCGTTATATCGGTGACGAAGCCCTTGAATCGTTAAGTCGACTTCGCAAATTGCACACCTTGTTTCTAGATGGCACTGATATTAGTGACGTCGGCCTCTCGTTTTTGGGAGGCGGAAGGTGCCGCTTAGCTTCACTGTCGCTCCGCGGATGCAGGAGGCTGACGGATGCTTGTATTGCTACACTGTTTGGTGGATCCTCCGGCCAGGGAATCCGGATTTTTGATCTTTCGAGAAACCCTAATCTCTCTGATAACGGAATCTTGGCGTTGGCCAGAACCAGAACTCCAATCATGGAACTGCGAATCCGGGAGTGTCCTCTAATTGGTGATACATCAGTCATGGCCTTGGCTTCGATGCAGGTTGAGGATGGGTCTTTTGGGAGTGCCCTGCACTTGCTGGATATATATGATTGTTGGGGTATCACTCCTCTTTCCATAAAGTGGTTCAAGAAGCCGTATTTCCCTAGACTGAAATGGCTGGGAATGACTGGATGCTTGAACAGGAACTTGGTGGATGCTCTGGTCAGGAACAGGCCTTTCTTGCACGTGAATTGCCTGGGCGAGGAACTTGGTGTCGGTTTTTTGGATTTGTCATTCGGCTGGTTTCATCGTGAGGAGGATGAGGTCGACGAACTCGAACAGTGGCTTTTGGTGGGCGAAGTCGCCAGTGATGATGAAGATGATGACATGGTGGAATATTAAGGGAGACATGTTGCACCTTAAGGCGCTGCTTGCTATAGTGTAAATATGATTTGCAACTCAAAAGTTGAGCTCATTCATCATTCATGAAGGTATTTTCAAACTGCTTTTTGGGATTTAGTGGCGCGCCATAAATCACGGTTTATGGAACATTCGTTAGGACTTTGGAGCATTTTATTGAGCGGGATAAAATAGGAAACTATTGACTGATGATTTATTGTTGTAGAGTATTGAAACTTCTTTTAATTTAGGCATGTATGGTTTTTATGAATGTAAATAAAACTGATTAGCCCTGAAAGTATATGTAATATATGCTGATTGTGCTGGCCAATATTCCTTTCTTTTTCATTTTTGTTTCAAATCTCTTTTTGATATAAGCTAGACCTCATAGCATTTCTATATAATATATTGCTTGTAACTTGCGCTTTTGTTAATTTTTGTTAAGATTTTTTGGAATATGCTCTATTTAAACTGTATAATAAAGTGGCACTCCAACTTTCTTCTGTGTTCC

Network for GWHGAAEX001316

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.32	F-box	36	67	7.60E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.600
SRP064423	SRR2545915	Juvenile tuber	7.570
SRP108465	SRR5643513	five period of Gastrodia elata	8.520
	SRR5643514	five period of Gastrodia elata	7.900
	SRR5643515	five period of Gastrodia elata	8.750
	SRR5643524	five period of Gastrodia elata	8.370
	SRR5643525	five period of Gastrodia elata	9.820
	SRR5643528	five period of Gastrodia elata	10.380
	SRR5643658	five period of Gastrodia elata	9.150
	SRR5643659	five period of Gastrodia elata	9.490
	SRR5643660	five period of Gastrodia elata	8.590
	SRR5643661	five period of Gastrodia elata	9.570
	SRR5643662	five period of Gastrodia elata	9.970
	SRR5643663	five period of Gastrodia elata	10.460
	SRR5643664	five period of Gastrodia elata	9.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.750
SRP279888	Gastro	Gastrodia elata tuber	10.84
	Juven	Juvenile tuber	9.88
	Mother_Gastro	Mother tuber of Gastrodia elata	17.00
	Mother_Juven	Mother tuber of Juvenile	16.01