Detail information of GWHGAAEX001328/evm.TU.scaffold_108.108


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|294055098|ref|YP_003548756.1|0nucleotide sugar dehydrogenase [Coraliomargarita akajimensis DSM 45221]
KOGKOG26660UDP-glucose/GDP-mannose dehydrogenase
nrgi|695015767|ref|XP_009394770.1|0PREDICTED: UDP-glucose 6-dehydrogenase 4 [Musa acuminata subsp. malaccensis]
Swissprottr|Q2QS14|UGDH4_ORYSJ0UDP-glucose 6-dehydrogenase 4
trEMBLtr|A0A096T909|A0A096T909_MAIZE0Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G328500_P01}
TAIRAT5G154900UDP-glucose 6-dehydrogenase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011727624702765139+
Transcript Sequence

Network for GWHGAAEX001328

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03721.13UDPG_MGDP_dh_N31852.50E-66
PF00984.18UDPG_MGDP_dh2103041.30E-31
PF03720.14UDPG_MGDP_dh_C3284513.00E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00012UGDH, ugd Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Ascorbate and aldarate metabolismmap00053
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287Molecular FunctionNAD binding
GO:0003979Molecular FunctionUDP-glucose 6-dehydrogenase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.210
SRR2545915Juvenile tuber57.420
SRP108465SRR5643513five period of Gastrodia elata95.920
SRR5643514five period of Gastrodia elata73.960
SRR5643515five period of Gastrodia elata84.150
SRR5643524five period of Gastrodia elata75.160
SRR5643525five period of Gastrodia elata155.500
SRR5643528five period of Gastrodia elata123.300
SRR5643658five period of Gastrodia elata172.730
SRR5643659five period of Gastrodia elata140.250
SRR5643660five period of Gastrodia elata121.840
SRR5643661five period of Gastrodia elata136.350
SRR5643662five period of Gastrodia elata131.830
SRR5643663five period of Gastrodia elata144.010
SRR5643664five period of Gastrodia elata117.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1102.250
SRR6049655Rhizomagastrodiae_C368-T10_good_186.260
SRR6049656Rhizomagastrodiae_C368-T07_good_1119.010
SRR6049657Rhizomagastrodiae_C368-T07_good_191.620
SRR6049658Rhizomagastrodiae_C368-T04_good_174.030
SRR6049659Rhizomagastrodiae_C368-T04_good_154.320
SRR6049660Rhizomagastrodiae_C368-T01_good_188.420
SRR6049661Rhizomagastrodiae_C368-T04_good_187.080
SRR6049662Rhizomagastrodiae_C368-T01_good_1130.780
SRR6049663Rhizomagastrodiae_C368-T01_good_1110.190
SRR6049664Rhizomagastrodiae_C368-T10_good_1125.100
SRR6049665Rhizomagastrodiae_C368-T10_good_1125.100
SRP279888GastroGastrodia elata tuber 117.02
JuvenJuvenile tuber114.84
Mother_GastroMother tuber of Gastrodia elata 127.99
Mother_JuvenMother tuber of Juvenile 110.13