Detail information of GWHGAAEX001332/evm.TU.scaffold_108.114
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256424528|ref|YP_003125181.1| | 3.00E-47 | chitinase [Chitinophaga pinensis DSM 2588] |
| KOG | KOG4742 | 3.00E-102 | Predicted chitinase |
| nr | gi|695012243|ref|XP_009392872.1| | 8.61E-107 | PREDICTED: chitinase 1-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q42993|CHI1_ORYSJ | 1.00E-106 | Chitinase 1 (Precursor) |
| trEMBL | tr|Q8VXF1|Q8VXF1_MUSAC | 6.00E-107 | Putative chitinase {ECO:0000313|EMBL:CAC81811.1} |
| TAIR | AT3G12500 | 3.00E-102 | basic chitinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000117 | 2870003 | 2873455 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001332
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00182.18 | Glyco_hydro_19 | 42 | 272 | 1.10E-103 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM18 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K20547 | CHIB | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 | ||
| MAPK signaling pathway - plant | map04016 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016998 | Biological Process | cell wall macromolecule catabolic process |
| GO:0006032 | Biological Process | chitin catabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004568 | Molecular Function | chitinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.740 |
| SRR5643514 | five period of Gastrodia elata | 22.540 | |
| SRR5643515 | five period of Gastrodia elata | 32.420 | |
| SRR5643524 | five period of Gastrodia elata | 32.440 | |
| SRR5643525 | five period of Gastrodia elata | 0.870 | |
| SRR5643528 | five period of Gastrodia elata | 0.370 | |
| SRR5643658 | five period of Gastrodia elata | 2.650 | |
| SRR5643659 | five period of Gastrodia elata | 0.350 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.140 | |
| SRR5643662 | five period of Gastrodia elata | 0.280 | |
| SRR5643663 | five period of Gastrodia elata | 0.140 | |
| SRR5643664 | five period of Gastrodia elata | 0.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.17 |
| Juven | Juvenile tuber | 0.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.27 | |
| Mother_Juven | Mother tuber of Juvenile | 0.73 |