Gene detail

Detail information of GWHGAAEX001334/evm.TU.scaffold_108.119

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|431929672\|ref\|YP_007242718.1\|	1.00E-14	WD40 repeat-containing protein [Thioflavicoccus mobilis 8321]
KOG	KOG2048	0	WD40 repeat protein
nr	gi\|743831910\|ref\|XP_010934832.1\|	0	PREDICTED: cirhin-like [Elaeis guineensis]
trEMBL	tr\|M0U5S3\|M0U5S3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP02610_001}
TAIR	AT1G27470	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	2933916	2977995	+

Transcript Sequence
>GWHTAAEX001334 CATGAAACAAGAAATACCGATAACCTAAGCCCTAATAATTCTTGATGCTGTGTTTTGGCCGCCGGGCTGCTTCGAGCTTCTCCCTTGAATTCTGCCGCGGCGCAGAAGCACACTTCCCGAATTCTGGTCACACCCTTTGCAAGTTCGAGAGCCTATAGCAGTTGATTGTGAGGATCGAAAGTTTTGTTTTGTGCACACTTTGCACTTATTTCGCTTCTTCAATAGGGAATGGAGAAGCTGCAGATATTTAGGAACAGCTCCGTCGAGTGGAATCCCTCGGCGGTGGTGGCTCTCGCCTCAAGCGACGATGGCTCGCAGGTGGCCGCTGCAAGGGAGGACGGATCCGTTGAGATTTGGCTCGTTTCTCCTGGTTCTGTTGGCTGGCATTGCCTGCTGACCATACATGGGAATCGTATCTCCAGAGTGTCTTCAATGATTTGGTTGCCTTCTTGTTCGAATGGTGGAGGGCGCAGCCGTTTGCTATCTTCCTGTATTGACGGGTCTATCTCTGAGTGGGATTTATTCTCGCCACAGCAGAAGATTGTAGTGGATACCATTGGTGTATCTATCTGGCAGATGGCATTAGAACCAACTGACGATTTATTGCATTTTGGGGTAAAAGACTCGCAACTATTACCTAATGGCAATACATACGGAGATGGTGAAAGTGATTCTGAATCTATTAATTCAGATGGCAACAATGACTATGTTGACCAAAATGCTGCAACTATAAGAAACAAAAGGTTGCATTTGGCTGTTGCATGTGATGATGGTTGTGTTCGTTTATATAGCGTTGAGGATGGCGATCTAACTTACAAAAGTTCTTTCCCTAGAGTTACTGGGCGCACACTCTGTGTTGCTTGGAGCCTTGATGCTAAGCTCTTATTTTCTGGGAGCAGTGATGGTTTCATTAGATGTTGGAATACATCATCTTTCCGTGAGACCTATCGTATTACTGTTGGACATGGAGGACTTGGAAGTGGACCGGAGCTATGTGTATGGTCTCTACTATTCTTAAGGTGTGGGACCCTAGTAAGTGGAGATAGTGCCGGAAGTGTTCAGTTTTGGGACAGTAAACATGGAAGTCTATTGCGAAGTCATGCTTATCATAAAGGTGATGTTAATGCTTTAGCGGCTGCTCCTAGCCACAATAGACTGTTTTCAGCTGGCTCTGATGGCCAGGTTATTCTTTATATGCGCTCCAGCAATGCTTCTGCTGATCAGAGTAAAGCTGAACCATTGGTTGATCATTCTCACAACTGGATATATGTTGGTTATGTCAGAGTTCATACTCATGATGTGAGGGCCTTGACAGTGGCTGTTCCGATTAGTTCGGAAGTTTCTTCTTCTAATGAGAAGGCACCCTGCTTAATTCGACATAGGGATAGGTCTATTAATTTTACATATCATAAATGGGCACACTTAGGGGTTCCCATGCTTATTTCTGGTGGTGATGACACCAAGCTATTTGCATACTCTGCCCGAGAATTCACACAATACTCTCCTCATGATATATGTCCTGCACCTCAACGGGCACTTGTTCAAATGGTGCCTAGTACTGCTGTTGATGGAGCTTCCTTGTTACTTGCTCAGCAAAGTACACAGCTGGATGTATTGCTTATAAAATCAAACCATTCTAGCATGTTGAGTGCATCGCATGGAAACAAAGCAACCACACAGGTTATAGCTCATGTTAAAAGCAAGGGATCTAGAAGAATCATTTCTAGTAGTATATCCAATGCTGGAAATCTTTTTGCTTACTCTGATCATACAAAGCCCTGTATCTTTGAACTAAAACAGCCAAAAGTCAAAAAAAGTGGTTGGTCTATCAACAAGTTAACACTACCTCGGCGATTGCCATGTGCTCAGTGTATGGTTTTTAGTGCTGATTCCTCTAGGTTGATATTAGCCGGTCATGAAAGAAAAATTTATGTTTTAGATGTCAAGAGTTTAGAACTAGTGCATACATTTTCTGCTCAAGTAAAGGAGGGTAGTTTGAGCTCGGTATCCCATGAACCTCCTATAACAAGAATGTTTACAAGTTCCGATGGACAATGGTTAGCTGCCAGCAATTGCTTTGGTGATATATATGTATTCAATCTTGAGACATACAGGCAACATTGGTTTATTTCTAGAATAGATGGCGCTTCTGTTACTGGTGGAGGTTTTCCTCCAAGTAATAGTAACGTGCTAGTTATTACGACATCTCTAAATCAGGTTTATGTGCTGGATGTGGAAGCAAAGCAATTAGGGGAATGGTCAAAGCGTCACATTAACATTTTGCCTAGAAGGTTTCAGGATTTTCCAGGAGAAGTTATTGGGTTATCTTTTCCACCCAATTCAGCATCAGTGATAATTTATAGTGCAAGGGCATTGTGCTTGATTGATTTTGAGATGCCGATTCATCGAGTTGAGGATGAGCCTGGCACTGAACTGAATCCATCCCTCTCCAGCAAAAAGAGCGGCAGCTTGAAGACAGCAAAGCTACACAATAGAAAGAGGAAACAGTCAGAAGAGAGAGAGATTACTAATCAGCATCATAATTATAATATTACTACTGCTAATAATAGTAATAAGAATAAAAAGTTGGATTTTTGTGCATTTAAAAATCCTGTTTTATTTGTCGGCCATCTGTCTGAGAATTCTTTGTTTATATTGGAGAGGCAGTGGGCGGATGTAGTCAAGAATTTGGGCGCTCCCGTTCACAGACATATTTATGGAACCTGAATGTACGCACTTCTCCCATCAATCTCTTGCTGCCTAAAAATTTAACCCGAAAAAATGAATTTTGCTTTTAAATGTAAAAATATTGATGATATTTAGTGTTATTCTATTCATCTTTTGAAGTGTTAGGGTTTTGTATGTAATATTATGGAAGATTTGTGTTATTCAGCACTCTGGTTATCTCATATCATGCCATAAGTATAGCTTAGGGAAGTTCTTGAATACCTTCGTTGCATCTTCTGCTTGAACTGCTATGTTTTAGTTTCTATTTAATTTGCTTTTCCCATCAACCTCATAAATTTCATACTTTGATATCCTACTAAGTTAGATGTT

Network for GWHGAAEX001334

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	17	43	0.26
PF00400.31	WD40	209	232	0.016

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14548	UTP4, CIRH1A	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.500
SRP064423	SRR2545915	Juvenile tuber	32.750
SRP108465	SRR5643513	five period of Gastrodia elata	26.850
	SRR5643514	five period of Gastrodia elata	20.470
	SRR5643515	five period of Gastrodia elata	17.850
	SRR5643524	five period of Gastrodia elata	20.140
	SRR5643525	five period of Gastrodia elata	15.610
	SRR5643528	five period of Gastrodia elata	14.190
	SRR5643658	five period of Gastrodia elata	14.220
	SRR5643659	five period of Gastrodia elata	19.970
	SRR5643660	five period of Gastrodia elata	20.790
	SRR5643661	five period of Gastrodia elata	17.770
	SRR5643662	five period of Gastrodia elata	18.810
	SRR5643663	five period of Gastrodia elata	18.630
	SRR5643664	five period of Gastrodia elata	15.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.860
SRP279888	Gastro	Gastrodia elata tuber	20.95
	Juven	Juvenile tuber	31.11
	Mother_Gastro	Mother tuber of Gastrodia elata	16.10
	Mother_Juven	Mother tuber of Juvenile	23.92