Gene detail

Detail information of GWHGAAEX001339/evm.TU.scaffold_108.127

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0998	Synaptic vesicle protein EHS-1 and related EH domain proteins
nr	gi\|743775797\|ref\|XP_010918291.1\|	PREDICTED: epidermal growth factor receptor substrate 15-like isoform X1 [Elaeis guineensis]
trEMBL	tr\|U5D420\|U5D420_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERN17184.1}
TAIR	AT1G20760	Calcium-binding EF hand family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	3087032	3138294	+

Transcript Sequence
>GWHTAAEX001339 TTATCTGCCGCGTGATAGAATGATCCACCTTATCGATCTGACTACGAATTATAACTAGACCGAGACGAGATTAGTATTCGAGTTTCCTTCCCTCACCAGGCAGTAAAAGCACAAGAAGTGTTTTTCTCCCTAACAGTGCCTTCTTGTCCGGGAGATCTCATAAACCCTTGCGCCAATTTCTCCCGCCTACGGGCGGTGGGATTTGCAAAATTGGGCTGTTTTTCTGTCGCTAGATTGATGTCCTTGAAGGGAATAGGGATCGACATCGAATCCTGATCTAGAAAATTCTGTCCCACATGGCGGCGCTGCAACACCCGAACGTCGACACTTTCGAGGCGTACTTCAAGAGGGCAGATTTGGATCAGGACGGAAGGATTAACGGCTCGGAAGCTGTTGCTTTTTTTAAAGGATCTAACTTACCTCAACCGGTCTTAGCTCAAATATGGAAATATTCTGATCAGAACAATAATGGTTTCCTTGGCCGTCCAGAATTTTACAATGCCTTGAGACTAGTCACAGTAGCTCAAAGTGGTCGTGAACTGACACCTGATATTGTTAAGGCTGCATTATTCAGTTCGGCTTCTGCAAAAATTCCTGTTCCAAAGATTAGTTTTGTACATAGTCCTGCAACTTTGATGAGCCCTTCGGTCACAGTGAGGGCCCAGTCTGGCTCAGTATTGCCAGCACCCACCCATATAGGTGTTGCTAACCCAATTGGACAGACATCTGTCCCAAGGGGGATATTACCTGGCTTTAGTGTGAATCAGCCGGTGATTTCCCCTTCAAACAGCCATCCAGCAAGGCCACCTTCAACTACTCCATATCCAGTACAAAGTGTCAGCCAAACACCTACAGGAGCAACCATTTTTTCAGGTTTGTCTCAAATATCAAGCACATCAAGCAAACCAACTGATTGGTATGGAATGAGTAGTGGGATATCAGTGAGCGGTACCTTACAAGGTCCTGTTCAAGGCATCACGTCTTCAACAAAACAGGATGGCTTCAGACTAACTAGTGTCGCAGGAACAACTACTGGATTGGCTATCAAGTCACCGATGCTATCTGTAGAAGCAAACTCAACATCTTCCAGTGTATTGGATGCAAAGGATTCAAAATCTTTGGTTGTATCTGGAAATGGTTTTTCTTCAGATTTTACTTTTGGAGGCGATGCATTTTCTGCAACTCCTCAAGCAAAGCAAGATGGAATCTCAAATACCTCTACTTATTCTACTGGCACACATAATTCATTGGGAATTATTTCAACAACTGCTGCATTTCTAAATTCCAAAATTGGCACCCTTGACTCATCACAGAACACTTTCATGCGCCCCCTTGGTAGTAATCAGCCTTTGGGGTCAACTGTACAAAAAAATTCAATAGATCCAATTCAGAACTCATCGGCAGAAATTTCAAATTCTACTAGCCAACCACAGCCTTCATGGCCAAGGATTAGTCAAACCGATATTCAAAGGTACACTAAGGTGTTTGTGGAGGTAGACAAAGACAGAGATGGAAAAATCTCTGGTGAACAAGCACGCAATTTGTTCCTCAGTTGGAAGCTTTCTAGAGAGGTTTTGAAGCAGGTGTGGGACTTAGCTGATCAAGATAGCGATGGCATGCTTTCACTCAGAGAATTCTGCATCGCTATCTACATGATGGAGCGGTATCGGGAGGGGCATCCTCTTCCAGCTTCACTTCCAAAGGTGCTTAGTTTGGATGAGACCTTGCTACAAGCCACTGGTCAACCTTTAGCTCCATATGGTGATCCAACTTGGCGACCAGGTCTTGGCTCATCACAAGGCATTCCTGGGCCAAGCCCCCCTGTGCCCATTACTGGAATTAGACCTCCCATGCAATCTAATGTTACTTATCAGGTAGATGGTGCTAGCCTCCCATCACAACAAAAGCTAATGGCATCATTTCCCAGAAATATGGAAAATCAACAGAATGAAAACCATACCCTTGAGGAGATTACTAATGCTCAAAAAAAGCCCAAGGAAGTGGAGAACAAGATATTGGATTCCAAGGAGAAGGTCGAGTATTATCGTACTAAGATGCAAGAACTAGTTCTTTATAAGAGTAGATGTGACAACAAACTCTTTGAGATCACTGAAAGAGCATCTAGTGATAAACTTGAGGTTGAGTCACTGGCAAAAAAGTATGAAGAAAAATACAAGCAAGTTTCAGAAGTGGCATCAAAACTTACTATGGAGGAGGCTGCTTTCCGCGACATGCAGGGGAGGAAATTGGAACTGCAAAATGCACTTGTACATATGGAGAAAGGTGGAAGTTCTGATGGATTACTTCAGGTTCGTGCTGATAGGATTCAATCTGATCTTGAAGAACTTGTGAAAATTTTGCAAGAACGTTGCAAACATCATGGGTTAGACGTCAAATCAAAAACAACCATTGAACTTCCCTTTGGTTGGCAGCCCGGCATTCAACAAGGTGCAATTGATTGGGATGAGGACTGGGACAAATTTGAAGATGAAGGGTTTTCTGTGGCAAAGGACCACCTATCTGTAGAGGTGGGAAGCAATCCGGAGTCTTTGGTGTGGGAAGACAAACCCTCCACCGACCGCATTCCTCCCGTTTCTCCTGATTCCGTCGTCGACGATCGAATCCATGAGAATGATTCGGCGGTGTTCGACGCTCAGAGCGACGGATACGGATCAGCAAAAAGCCCTTCCGGTAGTCCCGGTAAATACCCGTTCGAGGTTCATCACTATGACGACATGCACGATATTCCTGGGGATAAGTTTACCGGCGATGAGCCGTCCTGGGGCGAAGCTTTTGACGGGCACGACGATATAGATTCGGTTTGGAATAAGGGAGGGGGCATCGAGGAGGATAAGAAGAGCCCTTTCTTCGATTCCGTCCCGAGCACGCCGCATCAGCTGAGCGAAGGGACGGAGGAGCGGAGCTTCTTCGACGATTTCGGCCATCTGGATTCGCCGAAGCGGGAAAGCCATGCGAGGTTCGATTCCGTCAGCGAGGGTTACTCCTTCGACGACTCCGATCCCTTCGGAGTCGGCCTTTTCAAGCCTTCCAAGGACGGTGGAGATCATTCCCCCGCGGCGAAGGATTTCTCATTCTGAAAAAATTTCAGAAAAATTAAATATTTTTATTTATTTCTAGTTAATTTCAGTTGGGGTCCATTCTTTTTTTTTATTATTCATATATAATCTTTGATTTCTATTACAAGGTTTTTGGATTTGTTTTTAATATCCAGGGGAAGGTGTGTGGATTTAAATATTCTTACCGTTATCATTTAGTTTAGGAAAATTTGGAGGAATTTTTGTTGCTACAATTAAGAGATTGGCGATGTACTTTTTTAGTTGTTTCATATTACTGCATCAAGAAATAAAATAATTCATCTCAAGAAAAAAAATCATGTCTGTTTATAGTAGTAGCTGGGAGGTTAGCAATGATGGATACAGTGCTCGCCACTCGGCAAGGCAACCAAGTCGCTCTTGTTCTACGCTCACCAGATCTGAAGTTTGAAGCAGCTGAGTGTCCTGTGCTAGTGTTAAGTTTTGAGCTGCTTGCTTTTGTTTATTTTATATGTTTTGGATTTTCTTATCACTTGATTTTTTGTTCACATATTTTTCCTTAGGT

Network for GWHGAAEX001339

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12763.6	EF-hand_4	21	74	0.00013
PF12763.6	EF-hand_4	383	469	7.20E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12472	EPS15	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	68.300
SRP064423	SRR2545915	Juvenile tuber	52.350
SRP108465	SRR5643513	five period of Gastrodia elata	39.050
	SRR5643514	five period of Gastrodia elata	37.690
	SRR5643515	five period of Gastrodia elata	42.310
	SRR5643524	five period of Gastrodia elata	39.020
	SRR5643525	five period of Gastrodia elata	55.770
	SRR5643528	five period of Gastrodia elata	69.240
	SRR5643658	five period of Gastrodia elata	62.560
	SRR5643659	five period of Gastrodia elata	48.280
	SRR5643660	five period of Gastrodia elata	45.270
	SRR5643661	five period of Gastrodia elata	42.840
	SRR5643662	five period of Gastrodia elata	46.460
	SRR5643663	five period of Gastrodia elata	47.860
	SRR5643664	five period of Gastrodia elata	49.180
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	56.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	55.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	44.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	48.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.210
SRP279888	Gastro	Gastrodia elata tuber	54.70
	Juven	Juvenile tuber	52.48
	Mother_Gastro	Mother tuber of Gastrodia elata	71.14
	Mother_Juven	Mother tuber of Juvenile	70.70