Gene detail

Detail information of GWHGAAEX001340/evm.TU.scaffold_108.128

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|307155260\|ref\|YP_003890644.1\|	1.00E-19	WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
KOG	KOG0274	0	Cdc4 and related F-box and WD-40 proteins
nr	gi\|743828580\|ref\|XP_010933903.1\|	0	PREDICTED: zinc finger CCCH domain-containing protein 17-like [Elaeis guineensis]
Swissprot	tr\|Q0DYP5\|C3H17_ORYSJ	0	Zinc finger CCCH domain-containing protein 17
trEMBL	tr\|M0SRU9\|M0SRU9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P24880_001}
TAIR	AT5G51980	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	3147276	3157471	+

Transcript Sequence
>GWHTAAEX001340 CCGTAGACCTCTAACTCCGATCGCTTAAAGCTATTTGCCACCACCGGCTCTCCATCGGTCTCCCACTTCGTCTCCTTCTTCCTCTCAGACCTTTCCATAGCTCTGCTGTATAACTTAAAAGGTTTTTAACTGATACCTTCAAGCTATTGATTTCGATTCTTTATCGCAAAGTTTCAGTGGAAGCAGCAGGAGAGGGAGACTTTGATTCGGCTATCTTGATTTGATCTTCCTTAGATGCATATACTATTGTGTGCGCGGTTTCCCTTATGCCACCTGCTCCCTTCTCTTTTACCGGAGATTAACCGCCAGGGTTTCTTTCTACATTAGGGTTTCTGCAACATCGCATCATCGATCGATTGTTTTTTTACCGCATCGATGGATATCGAGACGTCCGAAAGGTACGGAAACAAGAGGATTCACCAGAGACTTGGGCCATCCCACGGGGGGACTGATCGCACGAATAATAAGGTCTGCTTCCACTGGAGGGCAGGGAGGTGCAGCCGCTTTCCTTGTCCGTATCTTCACAGCGAACTTCCGGAGCATTCGGAAGGAGGCTCTAAGCGAGCAGCTCCTGTCGAAGAGAGGGGATTTCGTTCTCAGCCCCTCGTTTGGAGAAATCCAAATATAAATGGGAATTCTGGCCCCCATTCAAAATGGGGCAAGGGACGTGGTGGAGGTGTTGGTGGCGGCGTTAGATCTCAACGAAAGGCATCAGATAAAATCTGTAACTATTTTATTGGCGGGACTTGTTCTTTTGGGGATAATTGCAGATTCTTACATTGCTCGTTCATCAGCGACTCCATCTCTCTCTTGACTCCTTTAATTGGGCATCAAAAGGATATCACTGGAATTGCCCTTCCAGCAGGGTCTGATAAACTTTACACAGGGAGCAAAGATGAATCTGTTCGGATTTGGGATTGCCAAACGGGCCAGTGTGTAGGGGTTGTTAACTTAGGAGGTGAAGTTGGCTGCATGCTCAGTGAGGGTCCTTGGATTTTTGTTGGAATTCCTAATGCTGTTAAGGCATGGAACACACAAACTGCTACTGATCTAAGTCTCAGTGGACCAACTGGACAAGTTTATGCTATGTCTGTTGGTAATGAGATGTTGTTTGCTGGAGCGCAGGACGGGCGTGTATTGGCGTGGAGGTTTCGAGCTGCCGGGGAATGTTTTGAACCAGCTGCATCTCTTACTGGTCATCGGCTTCCTGTGGTTTCTCTAATTGTTGGAGCAATGAGACTTTATTCTGGTTCTATGGATCATACAATTAGAGTTTGGGACCTTTCAACCCTACAGTGCATCCAGACATTGAGCGAACATTCAGCAGTTGTCATGTCTGTTCTATGTTGGGACCAATTTCTACTAAGTTGTTCACTAGATAATACAATAAAGGTTTGGGTTGCTACAGAAAATGGCAACCTGGAAGTAACATATACTCATCAAGAGGAGCACGGAGTGCTCGCGTTATGCGGCATGCATGATGCACAGGCCAAGCCTGTTTTGTTTTGCTCTTGCAACGACAACACTGTTCGTCTTTATGACCTGCCATCATTTAATGAGAGGGGTAAGATTTTTGCCAAGGAAGAAGTGAGAGCAATACAGATAGGCCCCGATGGCCTTTTTTTTACGGGGGACGGAACCGGCGAGCTCAAAGTGTGGAAGTGGCTGCCCGACAAGTGACCCCTCCCTCTCTCTCTCTCTCTCTCTCTCT

Network for GWHGAAEX001340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.23	zf-CCCH	117	136	7.40E-05
PF00400.31	WD40	145	181	1.90E-05
PF00400.31	WD40	269	302	0.0018
PF00400.31	WD40	307	341	0.0034

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	56.900
SRP064423	SRR2545915	Juvenile tuber	45.710
SRP108465	SRR5643513	five period of Gastrodia elata	40.730
	SRR5643514	five period of Gastrodia elata	36.070
	SRR5643515	five period of Gastrodia elata	34.250
	SRR5643524	five period of Gastrodia elata	34.620
	SRR5643525	five period of Gastrodia elata	35.790
	SRR5643528	five period of Gastrodia elata	35.500
	SRR5643658	five period of Gastrodia elata	37.940
	SRR5643659	five period of Gastrodia elata	35.640
	SRR5643660	five period of Gastrodia elata	37.450
	SRR5643661	five period of Gastrodia elata	38.750
	SRR5643662	five period of Gastrodia elata	38.570
	SRR5643663	five period of Gastrodia elata	32.680
	SRR5643664	five period of Gastrodia elata	41.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	65.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	60.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	54.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.760
SRP279888	Gastro	Gastrodia elata tuber	46.08
	Juven	Juvenile tuber	68.53
	Mother_Gastro	Mother tuber of Gastrodia elata	38.20
	Mother_Juven	Mother tuber of Juvenile	56.90