Gene detail

Detail information of GWHGAAEX001342/evm.TU.scaffold_108.130

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|124268989\|ref\|YP_001022993.1\|	4.00E-12	RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
KOG	KOG0131	2.00E-156	Splicing factor 3b, subunit 4
nr	gi\|720023514\|ref\|XP_010263356.1\|	0	PREDICTED: splicing factor 3B subunit 4 [Nelumbo nucifera]
Swissprot	tr\|P42731\|PABP2_ARATH	5.00E-35	Polyadenylate-binding protein 2
trEMBL	tr\|M1AHQ7\|M1AHQ7_SOLTU	3.00E-179	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400023075}
TAIR	AT2G18510	2.00E-156	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000117	3185760	3213107	-

Transcript Sequence
>GWHTAAEX001342 AGGCGGGCTCAATCCCCGCTATATTGTGGTGTACGTCGTCGTTTAGCTATCAACCCCGGGCATTTTGCAGAGCGACGCCCTGCTCGTTGAACGCCGAGAGGGAAAAGTGGAATAAAGCGGGAAGCGGGTGAGGAGAAATAGCCCTCGATGACTACTCGGATCGCTCCCGGCGTCGGTGCGAATCTCCTCGGCCAGCACTCCGCCGAGAGGAACCAAGAAGCAACCACCTATGTCGGCAATCTAGACCCTCAGATTACAGAGGAGCTGCTGTGGGAATTGTTTGTTCAAGCTGGGCCAGTTGTTAATGTATATGTTCCAAAAGATAGAGTGACAAATCTTCACCAAGGATATGGTTTTATAGAGTTCCGAAGCGAAGAAGATGCCGACTATGCAATCAAGATTTTGAACATGATTAAATTATATGGAAAACCTATTCGTGTAAATAAGGCTTCCCAAGACAAGAAGAGTTTGGATGTTGGTGCTAATCTTTTTGTTGGAAATCTTGATCCGGATGTTGACGAGAAACTTCTCTATGACACTTTCAGTGCATTTGGAGTAGTAGTCACCAATCCTAAGATAATGAGAGATCCTGAAACTGGGAATTCAAGAGGCTTTGGGTTTGTAAGCTATGATTCATTTGAATCATCGGATGCAGCGATAGAGGCCATGAATGGCCAGTATCTCTGCAACCGGCAGATAACAGTTTCATATGCGTACAAGAAGGACACAAAGGGAGAACGTCATGGAACACCTGCAGAGAGAATTCTTGCCTCGAATAATCCGGGAACACAGAGAAACCGGCCGCATACATTGTTTGCGAGTGGACCGCCCTCGCTTTCTGTGCCTCAAGCAAACGGCGTTGTTGGGGCCACTATTCCTCCTCGCCCCTTCATCAACGGTCAAATACCTCCCGCTCCAGTATTGATAGTCCGGCCACCGCCGCCTCCTCAAGGCGGGCAATTCCCCCCTCCAATGCAGATTGCGGCCCCATGGCATGGCCAGCCACAGCAGCCAGGCCATCCCATGATGCAACCGCCTCAAATGCAGATGCAGTTCAGGCCGCCAGTTCGGCCCCAGCCTCCTAATATGGTGCCTCCACCTAATATGATTCCACCGCCGCCTCATTCTGCTACACTGATGAGGCCGCCGCCGCCGCCACAGTCCGCAATGGCCATGCCGCCGCATATGTGGAGGCCGCCACCCCCGCCTCAGCAGCAAGTGATGAGTAGGCCAATGCCACCACCTCCGATGTCGATGCCTCCTCCAGTGAATTTACCGCCGCCGCCGCAATCCTATGCACCAGAAAATGCGAGGGGATGATAGGGTAGGTTCTTCCTGCATTTTACATATTTTTAGTGTGGATGTATTTCATTTTTGGAGAATTTGGTGAGATGTATTAGCTACTGCTGATGAGTGGCAATGCATCTATTGTCATATTTATAACTGATTCTTGTGGGGACTAATCAATACTTAAAAACAATGAGGATTTTGCCATGAATCCTCATACTTTGCCTTTGCCATGATTTTGGTTTTGCTTTTATAGTTTCCTCCTTTATGAGAGAGGGTGGGTTTGTTACTTATTTTTTATTGTGTTTTATTCTTTCTTACTTTTGTTTTTTGTGAG

Network for GWHGAAEX001342

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	28	97	1.40E-19
PF00076.21	RRM_1	114	184	1.80E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12831	SF3B4, SAP49	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	55.220
SRP064423	SRR2545915	Juvenile tuber	41.570
SRP108465	SRR5643513	five period of Gastrodia elata	59.750
	SRR5643514	five period of Gastrodia elata	43.130
	SRR5643515	five period of Gastrodia elata	45.780
	SRR5643524	five period of Gastrodia elata	42.100
	SRR5643525	five period of Gastrodia elata	42.330
	SRR5643528	five period of Gastrodia elata	42.490
	SRR5643658	five period of Gastrodia elata	41.290
	SRR5643659	five period of Gastrodia elata	54.520
	SRR5643660	five period of Gastrodia elata	64.110
	SRR5643661	five period of Gastrodia elata	60.130
	SRR5643662	five period of Gastrodia elata	74.390
	SRR5643663	five period of Gastrodia elata	71.310
	SRR5643664	five period of Gastrodia elata	78.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	103.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	126.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	100.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	100.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	118.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	125.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	105.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	112.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	87.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	97.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	93.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	93.060
SRP279888	Gastro	Gastrodia elata tuber	78.67
	Juven	Juvenile tuber	89.85
	Mother_Gastro	Mother tuber of Gastrodia elata	68.16
	Mother_Juven	Mother tuber of Juvenile	91.42