Detail information of GWHGAAEX001344/evm.TU.scaffold_108.133
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672143080|ref|XP_008795409.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LN01|PPR21_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g08070 |
| trEMBL | tr|F6I324|F6I324_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB61341.1} |
| TAIR | AT1G08070 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000117 | 3263212 | 3265679 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001344
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 73 | 122 | 3.00E-09 |
| PF01535.19 | PPR | 148 | 169 | 0.075 |
| PF13041.5 | PPR_2 | 175 | 223 | 2.20E-11 |
| PF01535.19 | PPR | 252 | 277 | 0.018 |
| PF01535.19 | PPR | 282 | 309 | 1.40E-05 |
| PF13041.5 | PPR_2 | 379 | 429 | 4.90E-09 |
| PF01535.19 | PPR | 456 | 481 | 0.0044 |
| PF14432.5 | DYW_deaminase | 555 | 679 | 1.90E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.650 |
| SRR2545915 | Juvenile tuber | 0.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.770 |
| SRR5643514 | five period of Gastrodia elata | 3.420 | |
| SRR5643515 | five period of Gastrodia elata | 3.340 | |
| SRR5643524 | five period of Gastrodia elata | 3.910 | |
| SRR5643525 | five period of Gastrodia elata | 0.360 | |
| SRR5643528 | five period of Gastrodia elata | 1.760 | |
| SRR5643658 | five period of Gastrodia elata | 0.430 | |
| SRR5643659 | five period of Gastrodia elata | 3.300 | |
| SRR5643660 | five period of Gastrodia elata | 1.670 | |
| SRR5643661 | five period of Gastrodia elata | 2.720 | |
| SRR5643662 | five period of Gastrodia elata | 2.130 | |
| SRR5643663 | five period of Gastrodia elata | 2.300 | |
| SRR5643664 | five period of Gastrodia elata | 1.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.65 |
| Juven | Juvenile tuber | 5.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.14 | |
| Mother_Juven | Mother tuber of Juvenile | 1.45 |