Detail information of GWHGAAEX001347/evm.TU.scaffold_108.140
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434397181|ref|YP_007131185.1| | 0 | Phosphoglucomutase [Stanieria cyanosphaera PCC 7437] |
| KOG | KOG0625 | 0 | Phosphoglucomutase |
| nr | gi|661891385|emb|CDP05267.1| | 0 | unnamed protein product [Coffea canephora] |
| Swissprot | tr|Q9SCY0|PGMP_ARATH | 0 | Phosphoglucomutase, chloroplastic (Precursor) |
| trEMBL | tr|A0A068UAH1|A0A068UAH1_COFCA | 0 | Coffea canephora |
| TAIR | AT5G51820 | 0 | phosphoglucomutase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000117 | 3345804 | 3356778 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001347
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02878.15 | PGM_PMM_I | 28 | 141 | 1.50E-26 |
| PF02879.15 | PGM_PMM_II | 175 | 278 | 3.50E-13 |
| PF02880.15 | PGM_PMM_III | 286 | 409 | 8.50E-29 |
| PF00408.19 | PGM_PMM_IV | 470 | 521 | 9.80E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0071704 | Biological Process | organic substance metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0016868 | Molecular Function | intramolecular transferase activity, phosphotransferases |
| GO:0000287 | Molecular Function | magnesium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.400 |
| SRR2545915 | Juvenile tuber | 34.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 58.930 |
| SRR5643514 | five period of Gastrodia elata | 61.410 | |
| SRR5643515 | five period of Gastrodia elata | 75.370 | |
| SRR5643524 | five period of Gastrodia elata | 53.560 | |
| SRR5643525 | five period of Gastrodia elata | 24.470 | |
| SRR5643528 | five period of Gastrodia elata | 20.820 | |
| SRR5643658 | five period of Gastrodia elata | 20.960 | |
| SRR5643659 | five period of Gastrodia elata | 68.610 | |
| SRR5643660 | five period of Gastrodia elata | 57.450 | |
| SRR5643661 | five period of Gastrodia elata | 61.380 | |
| SRR5643662 | five period of Gastrodia elata | 86.450 | |
| SRR5643663 | five period of Gastrodia elata | 85.200 | |
| SRR5643664 | five period of Gastrodia elata | 78.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 65.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 53.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 53.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 55.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 39.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 57.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 57.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.59 |
| Juven | Juvenile tuber | 50.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.26 | |
| Mother_Juven | Mother tuber of Juvenile | 22.82 |