Detail information of GWHGAAEX001361/evm.TU.scaffold_108.154


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|695018465|ref|XP_009396197.1|1.90E-105PREDICTED: pentatricopeptide repeat-containing protein At4g21190-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q8LG95|PP332_ARATH5.00E-94Pentatricopeptide repeat-containing protein At4g21190
trEMBLtr|E0CUT0|E0CUT0_VITVI4.00E-104Putative uncharacterized protein {ECO:0000313|EMBL:CBI22630.3}
TAIRAT4G211902.00E-88Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011735496313559793+
Transcript Sequence

Network for GWHGAAEX001361

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.030
SRR2545915Juvenile tuber11.570
SRP108465SRR5643513five period of Gastrodia elata15.920
SRR5643514five period of Gastrodia elata9.720
SRR5643515five period of Gastrodia elata10.100
SRR5643524five period of Gastrodia elata8.700
SRR5643525five period of Gastrodia elata13.090
SRR5643528five period of Gastrodia elata8.340
SRR5643658five period of Gastrodia elata10.740
SRR5643659five period of Gastrodia elata11.100
SRR5643660five period of Gastrodia elata11.490
SRR5643661five period of Gastrodia elata9.980
SRR5643662five period of Gastrodia elata10.040
SRR5643663five period of Gastrodia elata10.050
SRR5643664five period of Gastrodia elata8.540
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.210
SRR6049655Rhizomagastrodiae_C368-T10_good_115.690
SRR6049656Rhizomagastrodiae_C368-T07_good_120.800
SRR6049657Rhizomagastrodiae_C368-T07_good_118.830
SRR6049658Rhizomagastrodiae_C368-T04_good_114.770
SRR6049659Rhizomagastrodiae_C368-T04_good_113.880
SRR6049660Rhizomagastrodiae_C368-T01_good_117.640
SRR6049661Rhizomagastrodiae_C368-T04_good_117.880
SRR6049662Rhizomagastrodiae_C368-T01_good_122.770
SRR6049663Rhizomagastrodiae_C368-T01_good_119.890
SRR6049664Rhizomagastrodiae_C368-T10_good_125.540
SRR6049665Rhizomagastrodiae_C368-T10_good_125.540
SRP279888GastroGastrodia elata tuber 12.38
JuvenJuvenile tuber7.94
Mother_GastroMother tuber of Gastrodia elata 10.34
Mother_JuvenMother tuber of Juvenile 6.54