Detail information of GWHGAAEX001367/evm.TU.scaffold_109.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428775760|ref|YP_007167547.1|3.00E-12hypothetical protein PCC7418_1127 [Halothece sp. PCC 7418]
KOGKOG46482.00E-50Uncharacterized conserved protein, contains LRR repeats
nrgi|672115925|ref|XP_008781116.1|9.14E-109PREDICTED: RNA polymerase II-associated protein 3-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q9LVH5|OE64C_ARATH4.00E-18Outer envelope protein 64, chloroplastic
trEMBLtr|J3M3N9|J3M3N9_ORYBR3.00E-102Uncharacterized protein {ECO:0000313|EnsemblPlants:OB05G12130.1}
TAIRAT1G564402.00E-50Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011481578112782-
Transcript Sequence

Network for GWHGAAEX001367

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13181.5TPR_81251520.017
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms99.480
SRR2545915Juvenile tuber102.860
SRP108465SRR5643513five period of Gastrodia elata78.260
SRR5643514five period of Gastrodia elata79.250
SRR5643515five period of Gastrodia elata71.790
SRR5643524five period of Gastrodia elata80.190
SRR5643525five period of Gastrodia elata108.130
SRR5643528five period of Gastrodia elata102.750
SRR5643658five period of Gastrodia elata129.700
SRR5643659five period of Gastrodia elata73.810
SRR5643660five period of Gastrodia elata77.940
SRR5643661five period of Gastrodia elata66.740
SRR5643662five period of Gastrodia elata66.290
SRR5643663five period of Gastrodia elata79.960
SRR5643664five period of Gastrodia elata66.750
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_185.800
SRR6049655Rhizomagastrodiae_C368-T10_good_152.610
SRR6049656Rhizomagastrodiae_C368-T07_good_182.200
SRR6049657Rhizomagastrodiae_C368-T07_good_187.490
SRR6049658Rhizomagastrodiae_C368-T04_good_170.240
SRR6049659Rhizomagastrodiae_C368-T04_good_179.390
SRR6049660Rhizomagastrodiae_C368-T01_good_175.770
SRR6049661Rhizomagastrodiae_C368-T04_good_165.940
SRR6049662Rhizomagastrodiae_C368-T01_good_167.540
SRR6049663Rhizomagastrodiae_C368-T01_good_166.600
SRR6049664Rhizomagastrodiae_C368-T10_good_185.460
SRR6049665Rhizomagastrodiae_C368-T10_good_185.460
SRP279888GastroGastrodia elata tuber 68.40
JuvenJuvenile tuber91.38
Mother_GastroMother tuber of Gastrodia elata 52.83
Mother_JuvenMother tuber of Juvenile 54.97