Detail information of GWHGAAEX001368/evm.TU.scaffold_109.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|71907234|ref|YP_284821.1| | 3.00E-25 | protein kinase:GAF [Dechloromonas aromatica RCB] |
| nr | gi|672116343|ref|XP_008781331.1| | 0 | PREDICTED: cysteine-rich receptor-like protein kinase 2 [Phoenix dactylifera] |
| Swissprot | tr|Q9FNE1|CRK42_ARATH | 5.00E-173 | Cysteine-rich receptor-like protein kinase 42 (Precursor) |
| trEMBL | tr|W5ANK4|W5ANK4_WHEAT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_1DS_EF9240092.1} |
| TAIR | AT5G40380 | 2.00E-170 | cysteine-rich RLK (RECEPTOR-like protein kinase) 42 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000114 | 152365 | 165792 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001368
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01657.16 | Stress-antifung | 83 | 174 | 1.10E-08 |
| PF01657.16 | Stress-antifung | 197 | 284 | 5.20E-11 |
| PF07714.16 | Pkinase_Tyr | 371 | 639 | 9.90E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_DLSV |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.420 |
| SRR2545915 | Juvenile tuber | 5.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.470 |
| SRR5643514 | five period of Gastrodia elata | 2.400 | |
| SRR5643515 | five period of Gastrodia elata | 33.580 | |
| SRR5643524 | five period of Gastrodia elata | 7.360 | |
| SRR5643525 | five period of Gastrodia elata | 26.660 | |
| SRR5643528 | five period of Gastrodia elata | 64.050 | |
| SRR5643658 | five period of Gastrodia elata | 15.260 | |
| SRR5643659 | five period of Gastrodia elata | 29.730 | |
| SRR5643660 | five period of Gastrodia elata | 6.060 | |
| SRR5643661 | five period of Gastrodia elata | 24.470 | |
| SRR5643662 | five period of Gastrodia elata | 25.750 | |
| SRR5643663 | five period of Gastrodia elata | 16.040 | |
| SRR5643664 | five period of Gastrodia elata | 29.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.23 |
| Juven | Juvenile tuber | 1.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 56.88 | |
| Mother_Juven | Mother tuber of Juvenile | 112.03 |