Detail information of GWHGAAEX001369/evm.TU.scaffold_109.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|283781652|ref|YP_003372407.1| | 1.00E-21 | serine/threonine protein kinase [Pirellula staleyi DSM 6068] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|743783749|ref|XP_010921484.1| | 0 | PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q8RWW0|ALE2_ARATH | 2.00E-123 | Receptor-like serine/threonine-protein kinase ALE2 (Precursor) |
| trEMBL | tr|F2DN11|F2DN11_HORVD | 0 | Predicted protein {ECO:0000313|EMBL:BAJ96482.1} |
| TAIR | AT4G02010 | 0 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000114 | 174304 | 196737 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001369
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 405 | 675 | 1.30E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_Extensin |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.760 |
| SRR2545915 | Juvenile tuber | 14.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.670 |
| SRR5643514 | five period of Gastrodia elata | 15.600 | |
| SRR5643515 | five period of Gastrodia elata | 18.080 | |
| SRR5643524 | five period of Gastrodia elata | 15.310 | |
| SRR5643525 | five period of Gastrodia elata | 22.320 | |
| SRR5643528 | five period of Gastrodia elata | 25.260 | |
| SRR5643658 | five period of Gastrodia elata | 24.910 | |
| SRR5643659 | five period of Gastrodia elata | 22.940 | |
| SRR5643660 | five period of Gastrodia elata | 23.420 | |
| SRR5643661 | five period of Gastrodia elata | 22.370 | |
| SRR5643662 | five period of Gastrodia elata | 23.500 | |
| SRR5643663 | five period of Gastrodia elata | 23.100 | |
| SRR5643664 | five period of Gastrodia elata | 24.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.38 |
| Juven | Juvenile tuber | 21.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.67 | |
| Mother_Juven | Mother tuber of Juvenile | 18.81 |