Detail information of GWHGAAEX001373/evm.TU.scaffold_109.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434404678|ref|YP_007147563.1| | 0 | glycogen debranching enzyme [Cylindrospermum stagnale PCC 7417] |
| nr | gi|672139171|ref|XP_008793361.1| | 0 | PREDICTED: alkaline/neutral invertase CINV2 [Phoenix dactylifera] |
| Swissprot | tr|Q10MC0|NIN1_ORYSJ | 0 | Neutral/alkaline invertase 1, mitochondrial {ECO:0000305} (Precursor) |
| trEMBL | tr|M0TSM6|M0TSM6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P22230_001} |
| TAIR | AT1G56560 | 0 | Plant neutral invertase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000114 | 376034 | 392206 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001373
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12899.6 | Glyco_hydro_100 | 119 | 559 | 5.20E-215 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH100 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0033926 | Molecular Function | glycopeptide alpha-N-acetylgalactosaminidase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.020 |
| SRR2545915 | Juvenile tuber | 11.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.380 |
| SRR5643514 | five period of Gastrodia elata | 7.420 | |
| SRR5643515 | five period of Gastrodia elata | 11.280 | |
| SRR5643524 | five period of Gastrodia elata | 8.110 | |
| SRR5643525 | five period of Gastrodia elata | 16.740 | |
| SRR5643528 | five period of Gastrodia elata | 17.740 | |
| SRR5643658 | five period of Gastrodia elata | 13.920 | |
| SRR5643659 | five period of Gastrodia elata | 21.400 | |
| SRR5643660 | five period of Gastrodia elata | 25.950 | |
| SRR5643661 | five period of Gastrodia elata | 16.950 | |
| SRR5643662 | five period of Gastrodia elata | 6.560 | |
| SRR5643663 | five period of Gastrodia elata | 11.490 | |
| SRR5643664 | five period of Gastrodia elata | 6.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.850 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.98 |
| Juven | Juvenile tuber | 11.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.19 | |
| Mother_Juven | Mother tuber of Juvenile | 16.58 |