Detail information of GWHGAAEX001374/evm.TU.scaffold_109.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427702896|ref|YP_007046118.1|3.00E-9830S ribosomal protein S1 [Cyanobium gracile PCC 6307]
nrgi|720047604|ref|XP_010270863.1|0PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
Swissprottr|P29344|RR1_SPIOL030S ribosomal protein S1, chloroplastic (Precursor)
trEMBLtr|W9RV42|W9RV42_9ROSA030S ribosomal protein S1 {ECO:0000313|EMBL:EXB94381.1}
TAIRAT5G297710Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000114491009508862+
Transcript Sequence

Network for GWHGAAEX001374

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00575.22S11922565.20E-11
PF00575.22S12683391.40E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02945RP-S1, rpsA Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms54.390
SRR2545915Juvenile tuber67.280
SRP108465SRR5643513five period of Gastrodia elata50.770
SRR5643514five period of Gastrodia elata45.220
SRR5643515five period of Gastrodia elata49.670
SRR5643524five period of Gastrodia elata47.500
SRR5643525five period of Gastrodia elata45.410
SRR5643528five period of Gastrodia elata36.250
SRR5643658five period of Gastrodia elata39.790
SRR5643659five period of Gastrodia elata71.350
SRR5643660five period of Gastrodia elata71.130
SRR5643661five period of Gastrodia elata81.250
SRR5643662five period of Gastrodia elata74.440
SRR5643663five period of Gastrodia elata76.260
SRR5643664five period of Gastrodia elata76.840
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_153.150
SRR6049655Rhizomagastrodiae_C368-T10_good_124.590
SRR6049656Rhizomagastrodiae_C368-T07_good_144.600
SRR6049657Rhizomagastrodiae_C368-T07_good_153.800
SRR6049658Rhizomagastrodiae_C368-T04_good_145.580
SRR6049659Rhizomagastrodiae_C368-T04_good_151.500
SRR6049660Rhizomagastrodiae_C368-T01_good_151.910
SRR6049661Rhizomagastrodiae_C368-T04_good_143.810
SRR6049662Rhizomagastrodiae_C368-T01_good_147.940
SRR6049663Rhizomagastrodiae_C368-T01_good_146.330
SRR6049664Rhizomagastrodiae_C368-T10_good_144.710
SRR6049665Rhizomagastrodiae_C368-T10_good_144.710
SRP279888GastroGastrodia elata tuber 68.83
JuvenJuvenile tuber74.12
Mother_GastroMother tuber of Gastrodia elata 24.13
Mother_JuvenMother tuber of Juvenile 38.98