Detail information of GWHGAAEX001377/evm.TU.scaffold_109.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672139276|ref|XP_008793418.1|3.58E-67PREDICTED: transcription factor TIP2-like [Phoenix dactylifera]
Swissprottr|Q5JNS0|TIP2_ORYSJ1.00E-55Transcription factor TIP2
trEMBLtr|M0S2V7|M0S2V7_MUSAM1.00E-61Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P25000_001}
TAIRAT1G061704.00E-42basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000114560392562179-
Transcript Sequence

Network for GWHGAAEX001377

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.25HLH971399.50E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983Molecular Functionprotein dimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.850
SRR2545915Juvenile tuber4.440
SRP108465SRR5643513five period of Gastrodia elata0.760
SRR5643514five period of Gastrodia elata0.810
SRR5643515five period of Gastrodia elata0.300
SRR5643524five period of Gastrodia elata1.070
SRR5643525five period of Gastrodia elata8.870
SRR5643528five period of Gastrodia elata5.360
SRR5643658five period of Gastrodia elata7.010
SRR5643659five period of Gastrodia elata2.020
SRR5643660five period of Gastrodia elata5.680
SRR5643661five period of Gastrodia elata3.420
SRR5643662five period of Gastrodia elata4.350
SRR5643663five period of Gastrodia elata1.030
SRR5643664five period of Gastrodia elata4.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.370
SRR6049655Rhizomagastrodiae_C368-T10_good_12.930
SRR6049656Rhizomagastrodiae_C368-T07_good_11.630
SRR6049657Rhizomagastrodiae_C368-T07_good_12.590
SRR6049658Rhizomagastrodiae_C368-T04_good_11.980
SRR6049659Rhizomagastrodiae_C368-T04_good_12.340
SRR6049660Rhizomagastrodiae_C368-T01_good_12.230
SRR6049661Rhizomagastrodiae_C368-T04_good_13.650
SRR6049662Rhizomagastrodiae_C368-T01_good_11.290
SRR6049663Rhizomagastrodiae_C368-T01_good_11.870
SRR6049664Rhizomagastrodiae_C368-T10_good_10.710
SRR6049665Rhizomagastrodiae_C368-T10_good_10.710
SRP279888GastroGastrodia elata tuber 5.50
JuvenJuvenile tuber5.54
Mother_GastroMother tuber of Gastrodia elata 25.23
Mother_JuvenMother tuber of Juvenile 8.07