Detail information of GWHGAAEX001380/evm.TU.scaffold_109.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|170291060|ref|YP_001737876.1|7.00E-10translation initiation factor IF2/IF5 [Candidatus Korarchaeum cryptofilum OPF8]
KOGKOG27671.00E-173Translation initiation factor 5 (eIF-5)
nrgi|695054798|ref|XP_009415540.1|0PREDICTED: eukaryotic translation initiation factor 5-like [Musa acuminata subsp. malaccensis]
Swissprottr|P48724|IF5_PHAVU0Eukaryotic translation initiation factor 5
trEMBLtr|B9N7N9|B9N7N9_POPTR0Eukaryotic translation initiation factor 5-2 family protein {ECO:0000313|EMBL:ERP62053.1}
TAIRAT1G367301.00E-173Translation initiation factor IF2/IF5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000114645913647250+
Transcript Sequence

Network for GWHGAAEX001380

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01873.16eIF-5_eIF-2B111275.30E-37
PF02020.17W23674453.90E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03262EIF5 RNA transport map03013
Apoptosis - flymap04214

Gene Ontology

GO term OntologyName
GO:0006413Biological Processtranslational initiation
GO:0005515Molecular Functionprotein binding
GO:0003743Molecular Functiontranslation initiation factor activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms185.820
SRR2545915Juvenile tuber153.960
SRP108465SRR5643513five period of Gastrodia elata234.360
SRR5643514five period of Gastrodia elata219.610
SRR5643515five period of Gastrodia elata192.290
SRR5643524five period of Gastrodia elata247.960
SRR5643525five period of Gastrodia elata330.620
SRR5643528five period of Gastrodia elata392.730
SRR5643658five period of Gastrodia elata397.000
SRR5643659five period of Gastrodia elata279.910
SRR5643660five period of Gastrodia elata355.690
SRR5643661five period of Gastrodia elata330.830
SRR5643662five period of Gastrodia elata370.060
SRR5643663five period of Gastrodia elata313.720
SRR5643664five period of Gastrodia elata386.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1244.570
SRR6049655Rhizomagastrodiae_C368-T10_good_1214.360
SRR6049656Rhizomagastrodiae_C368-T07_good_1295.850
SRR6049657Rhizomagastrodiae_C368-T07_good_1227.220
SRR6049658Rhizomagastrodiae_C368-T04_good_1265.280
SRR6049659Rhizomagastrodiae_C368-T04_good_1245.610
SRR6049660Rhizomagastrodiae_C368-T01_good_1275.030
SRR6049661Rhizomagastrodiae_C368-T04_good_1251.280
SRR6049662Rhizomagastrodiae_C368-T01_good_1308.810
SRR6049663Rhizomagastrodiae_C368-T01_good_1315.990
SRR6049664Rhizomagastrodiae_C368-T10_good_1295.990
SRR6049665Rhizomagastrodiae_C368-T10_good_1295.990
SRP279888GastroGastrodia elata tuber 385.44
JuvenJuvenile tuber387.06
Mother_GastroMother tuber of Gastrodia elata 248.36
Mother_JuvenMother tuber of Juvenile 307.90