Gene detail

Detail information of GWHGAAEX001382/evm.TU.scaffold_109.22

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695047428\|ref\|XP_009411594.1\|	1.83E-146	PREDICTED: uncharacterized protein LOC103993304 isoform X2 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0TPE4\|M0TPE4_MUSAM	7.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P10910_001}
TAIR	AT3G62210	4.00E-72	Putative endonuclease or glycosyl hydrolase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000114	682549	715269	-

Transcript Sequence
>GWHTAAEX001382 CCGGTTTTCTTATCAGTTGTGCTTACGTATCAGTTGTGTGAACCGAAAAGGATCACAAAACATCTCCATTCACCTCCCCTCCAATTTTTTTTTTCCGTTCCGCATATTTCTGCCTAAGCCGGCAATCGAGGCGAAAGGGAAGAAGGCTTCCTAGGCCCTCCAGGACTGCACCGAGGAGAGCCATCAAATAACCATGGCTAACGCGGCTATTGGCGGCGGTGTCAGTTCAACGGCGACCGGAGGATTTGGTCTGACTGCGGACGGAAACTATGCGATGGCGAAGACGTCTGTCTGGTGGGACATCGAGAACTGCCAAGTGCCGAAGGACTGCGATCCGCACCTTATCGCCAAGAACATAAGCTCCGCTCTGGCGACTATGGGCTACAAGGGACCTGTTTCCATTTCGGCCTACGGTGATACCAAATTGATCAATGCCAGCGTTCAGCAGGCCCTCTCAAGTACCGGGATTTCGCTTAACCACGTTCCCGGCGGTGTAAAGGATGCCAGCGATAAGAAAATATTAGTAGGCATGCTATTTTGGGCTGTTGACAACCCACCTCCTGCAAATTATTTGCTTATTTCCGGGGACCGCGACTTCTCTAATGCCTTGCATCAACTTAGTTTGAGGAGATATAACATCCTTTTGGCTCAGCCTCCCAATGTTTCTCTAGCACTTTCTACTGCTGCCAAAACCGTATGGTACTGGGCTGATCTTGTTGCAGGCGGCCCTCCATTGCCACTTTCTTTTGCAAATGAAAATGGCTCATCTTTGGAATCCAGCAAAAGTATCCCTTTAAAGATAAGCAAGCCTCTTGATCCCCTCTCATCCAACTCAAACCCAGCATGTCAGAAAAATTATGCCAATGGAAAAACCGACAACCAAACCAAAGGGCGGCAACAACCACTTGCCGCCCAAAAACAGCCAAACGATTGTACACAGTATCACTCTGGAAGTCAAAATCTTACTTTCATGGCACAGAGCAGTCAGGCATCTAGCAGAAGTATATCAAATACTACTTATTCTGATGATAAACCTTCTATCATCCCTCAGCAATCCCTTATTTTTAATTCTTCTCCTCACAAGCTCAATGGCTCACAGAAGCCTGAAATGAAGCAATTTGAATATGTAGGAGATTCTCAACGCAGCAAAATGGAGCCTCGCCATTCTAATGATAATGTTGTAAGCCTCTCAAATAAGTTAATTAATAGCCAAGATGGACCTCCCCACTCTAGAAATCCGCTGCATATCATCCCTTCTCGACCCAATCAGCAGCTTGGGGCGGACGGAACCTATCCTACTTCACCCATGGTTTTTTCTTATTCTCAATCTACTTATCCTTATGCTCCATTTTATTCTCCAAGACCCGTAACCCAAACTATTTCAGCACAACAAAACAGGCCGGCTGCCTGCCCCCTTTTATTTCCCTTGACAAAGTCTAATGCATCTTTACTTTCTACAGAACCCTCTCCTACTATAATACCTGATATTAGTAAACTTAAATATGCTTTTTCTCAAAAAAATATGAAAGGCAATAATGGTTCCAGGAACCCCACCGGTCCTTCTCCTGCTACTGTCCAGAGTCTGACGGATACTATTTTGTCCGCACTCACCGTTCTGAGAATAGAGAAGATCCCCCCAACAGAAACTAATATATTGGACTGTATTCGATATGGGGAGCTAAACATACAAGATTTTGATGTTAGAAAGGCATTGGAATTTGCCGTTCAGTATCATGTTGTTGTTAAGTACAAACTTGGAGGCAACTTTTTTTATATTAAAAAAGGTGAATTACTGTGGAAATGTGTGAATGTTATGGACAATCAGGTCAAACATTCAAAGGTAGTGTGTGATGCAGTTCTCAGGTTCCTATCTTCTGCTGATGGACATTCTTCCATTATGGCTTCTCGAAGCATGTATGAGGCTGCATTCATCCTAAAGCAGTCGTGTTTAAAGACAACTGCTTTGGGCGAAATTCTGCAGATACTTAACGCTGCAATCCACCAAAAAAAGTGGATTTTGCCTCATTCATCGGGCTGGCAGCCGCTGTCCCTTTTACCCGCAACCGAGCCTCCGGGCAGTTAATTAAAGCAACGTTCATATGAGTGAAAACTAAATCCAAGTATGAAGTTGCTCCCCCTGTAATGAGGGTGGTAGAGTTGATTCTTGTAATATCATCAGTACTGGTTTCATCGGAGCACTAGAAGTATTTTATGAAGTTTCATCTGTGTTGAGAGAGAACTTCAATGGAATTTCTCATCGCTTCAGGACTAGTTTGATTGGATATTATCTTCAATGTTATTAAAATAGCATGCTGTAAAACAAGTTTTTGAATGACATTATTGTTGAGATTATAGTGGGTCTTTGGTTCAATGTTGTTTGATTATTACGTGTGCTTTGTTAAGGTATTTTCATGTAATATTGAGGGAATAACACGACTTGACATTTCCAAACAACTTTACAAATAACAGGGAATCAGTGTTATTAGATC

Network for GWHGAAEX001382

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01936.17	NYN	30	166	6.70E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.490
SRP064423	SRR2545915	Juvenile tuber	9.750
SRP108465	SRR5643513	five period of Gastrodia elata	8.460
	SRR5643514	five period of Gastrodia elata	6.750
	SRR5643515	five period of Gastrodia elata	7.000
	SRR5643524	five period of Gastrodia elata	7.170
	SRR5643525	five period of Gastrodia elata	9.750
	SRR5643528	five period of Gastrodia elata	11.740
	SRR5643658	five period of Gastrodia elata	12.800
	SRR5643659	five period of Gastrodia elata	8.020
	SRR5643660	five period of Gastrodia elata	10.260
	SRR5643661	five period of Gastrodia elata	6.760
	SRR5643662	five period of Gastrodia elata	6.560
	SRR5643663	five period of Gastrodia elata	6.800
	SRR5643664	five period of Gastrodia elata	6.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.550
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.980
SRP279888	Gastro	Gastrodia elata tuber	7.40
	Juven	Juvenile tuber	10.76
	Mother_Gastro	Mother tuber of Gastrodia elata	5.91
	Mother_Juven	Mother tuber of Juvenile	4.92