Detail information of GWHGAAEX001386/evm.TU.scaffold_109.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3334 | 2.00E-26 | Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) |
| nr | gi|672107926|ref|XP_008782491.1| | 3.92E-32 | PREDICTED: transcription initiation factor TFIID subunit 9 [Phoenix dactylifera] |
| Swissprot | tr|Q9SYH2|TAF9_ARATH | 5.00E-27 | Transcription initiation factor TFIID subunit 9 |
| trEMBL | tr|B6TMH7|B6TMH7_MAIZE | 2.00E-29 | Uncharacterized protein {ECO:0000313|EMBL:ACN31980.1, ECO:0000313|EnsemblPlants:GRMZM2G114312_P01} |
| TAIR | AT1G54140 | 2.00E-26 | TATA binding protein associated factor 21kDa subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000114 | 860224 | 862587 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001386
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02291.14 | TFIID-31kDa | 57 | 134 | 9.60E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03133 | TAF9B, TAF9 | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006352 | Biological Process | DNA-templated transcription, initiation |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.660 |
| SRR2545915 | Juvenile tuber | 0.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.730 |
| SRR5643514 | five period of Gastrodia elata | 1.760 | |
| SRR5643515 | five period of Gastrodia elata | 1.800 | |
| SRR5643524 | five period of Gastrodia elata | 1.900 | |
| SRR5643525 | five period of Gastrodia elata | 1.220 | |
| SRR5643528 | five period of Gastrodia elata | 1.450 | |
| SRR5643658 | five period of Gastrodia elata | 0.990 | |
| SRR5643659 | five period of Gastrodia elata | 1.150 | |
| SRR5643660 | five period of Gastrodia elata | 1.340 | |
| SRR5643661 | five period of Gastrodia elata | 0.860 | |
| SRR5643662 | five period of Gastrodia elata | 1.450 | |
| SRR5643663 | five period of Gastrodia elata | 1.160 | |
| SRR5643664 | five period of Gastrodia elata | 0.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.18 |
| Juven | Juvenile tuber | 3.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.84 | |
| Mother_Juven | Mother tuber of Juvenile | 5.97 |