Detail information of GWHGAAEX001388/evm.TU.scaffold_109.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390951925|ref|YP_006415684.1| | 1.00E-27 | cysteine protease [Thiocystis violascens DSM 198] |
| KOG | KOG1543 | 2.00E-170 | Cysteine proteinase Cathepsin L |
| nr | gi|720046566|ref|XP_010270545.1| | 0 | PREDICTED: xylem cysteine proteinase 1 [Nelumbo nucifera] |
| Swissprot | tr|O65493|XCP1_ARATH | 5.00E-171 | Xylem cysteine proteinase 1 (Precursor) |
| trEMBL | tr|M0S586|M0S586_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P04950_001} |
| TAIR | AT4G35350 | 2.00E-170 | xylem cysteine peptidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000114 | 881865 | 884262 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001388
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08246.11 | Inhibitor_I29 | 48 | 104 | 8.30E-20 |
| PF00112.22 | Peptidase_C1 | 133 | 349 | 7.30E-81 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0008234 | Molecular Function | cysteine-type peptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.520 |
| SRR2545915 | Juvenile tuber | 2.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.160 |
| SRR5643514 | five period of Gastrodia elata | 9.350 | |
| SRR5643515 | five period of Gastrodia elata | 7.160 | |
| SRR5643524 | five period of Gastrodia elata | 7.820 | |
| SRR5643525 | five period of Gastrodia elata | 30.300 | |
| SRR5643528 | five period of Gastrodia elata | 54.210 | |
| SRR5643658 | five period of Gastrodia elata | 104.130 | |
| SRR5643659 | five period of Gastrodia elata | 2.050 | |
| SRR5643660 | five period of Gastrodia elata | 0.120 | |
| SRR5643661 | five period of Gastrodia elata | 0.180 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.230 | |
| SRR5643664 | five period of Gastrodia elata | 0.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.59 |
| Juven | Juvenile tuber | 0.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.86 | |
| Mother_Juven | Mother tuber of Juvenile | 0.70 |