Detail information of GWHGAAEX001396/evm.TU.scaffold_109.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0570 | 3.00E-79 | Transcriptional coactivator |
| nr | gi|460385328|ref|XP_004238356.1| | 5.71E-92 | PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum] |
| Swissprot | tr|Q9LZD7|MED7B_ARATH | 1.00E-79 | Mediator of RNA polymerase II transcription subunit 7b |
| trEMBL | tr|K4BVM2|K4BVM2_SOLLC | 2.00E-92 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g081430.2.1} |
| TAIR | AT5G03500_1 | 3.00E-79 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000114 | 1084106 | 1103932 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001396
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05983.10 | Med7 | 5 | 160 | 7.10E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MED7 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0003712 | Molecular Function | transcription cofactor activity |
| GO:0016592 | Cellular Component | mediator complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 53.950 |
| SRR2545915 | Juvenile tuber | 37.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 66.040 |
| SRR5643514 | five period of Gastrodia elata | 67.410 | |
| SRR5643515 | five period of Gastrodia elata | 62.440 | |
| SRR5643524 | five period of Gastrodia elata | 68.570 | |
| SRR5643525 | five period of Gastrodia elata | 46.480 | |
| SRR5643528 | five period of Gastrodia elata | 51.900 | |
| SRR5643658 | five period of Gastrodia elata | 45.690 | |
| SRR5643659 | five period of Gastrodia elata | 72.240 | |
| SRR5643660 | five period of Gastrodia elata | 64.280 | |
| SRR5643661 | five period of Gastrodia elata | 63.050 | |
| SRR5643662 | five period of Gastrodia elata | 53.790 | |
| SRR5643663 | five period of Gastrodia elata | 62.870 | |
| SRR5643664 | five period of Gastrodia elata | 54.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 56.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 51.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 56.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 49.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 56.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 52.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 50.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 43.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 48.150 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 63.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 63.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 72.09 |
| Juven | Juvenile tuber | 89.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.29 | |
| Mother_Juven | Mother tuber of Juvenile | 60.10 |