Detail information of GWHGAAEX001401/evm.TU.scaffold_109.42


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|695062810|ref|XP_009419889.1|7.70E-96PREDICTED: uncharacterized protein LOC103999772 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SB42|MDA1_ARATH1.00E-17Mediator-associated protein 1
trEMBLtr|M0TSM5|M0TSM5_MUSAM1.00E-89Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P22220_001}
TAIRAT5G280401.00E-73DNA-binding storekeeper protein-related transcriptional regulator

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011413045711328531+
Transcript Sequence

Network for GWHGAAEX001401

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04504.13DUF5731312283.10E-33
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGeBP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.170
SRR2545915Juvenile tuber13.750
SRP108465SRR5643513five period of Gastrodia elata18.100
SRR5643514five period of Gastrodia elata13.940
SRR5643515five period of Gastrodia elata16.460
SRR5643524five period of Gastrodia elata14.080
SRR5643525five period of Gastrodia elata20.310
SRR5643528five period of Gastrodia elata19.110
SRR5643658five period of Gastrodia elata16.460
SRR5643659five period of Gastrodia elata16.610
SRR5643660five period of Gastrodia elata18.060
SRR5643661five period of Gastrodia elata16.800
SRR5643662five period of Gastrodia elata19.570
SRR5643663five period of Gastrodia elata15.700
SRR5643664five period of Gastrodia elata16.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.930
SRR6049655Rhizomagastrodiae_C368-T10_good_116.260
SRR6049656Rhizomagastrodiae_C368-T07_good_117.340
SRR6049657Rhizomagastrodiae_C368-T07_good_116.470
SRR6049658Rhizomagastrodiae_C368-T04_good_117.900
SRR6049659Rhizomagastrodiae_C368-T04_good_115.190
SRR6049660Rhizomagastrodiae_C368-T01_good_116.690
SRR6049661Rhizomagastrodiae_C368-T04_good_115.390
SRR6049662Rhizomagastrodiae_C368-T01_good_115.730
SRR6049663Rhizomagastrodiae_C368-T01_good_117.080
SRR6049664Rhizomagastrodiae_C368-T10_good_117.180
SRR6049665Rhizomagastrodiae_C368-T10_good_117.180
SRP279888GastroGastrodia elata tuber 13.59
JuvenJuvenile tuber15.86
Mother_GastroMother tuber of Gastrodia elata 19.53
Mother_JuvenMother tuber of Juvenile 15.18